Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1701 ATGGTTCATTCAAGGAAGTTTAGAGGTGTCAGACAACGTCAGTGGGGCTCTTGGGTGTCAGAGATTCGACACCCTTTACTGAAGAGGAGGGTTTGGCTGGGTACATTTGAGACAGCAGAGGCAGCTGCAAGAGCATATGATCAAGCATCGATCTTGATGAACGGTCAAAATGCCAAGACTAATTTTCCCAATTCGAAGAATCAACCACATGATCATGATGATCAGCATCATCATCACTATCGTCTTCCAGGTGGAGGAGATCATGATAAAGTCAGATCATCATCATTAGAGAATGGATCCTCGCCGCCATTGATGTCCGCGAAGGAGCTTTCAGAGCTGCTCAACACAAAGCTTAAGAAATGCTGCAAAGACCCTTCTCCTTCTCTTACCTGTTTGAGGCTCGACAGTGACAACTCTCATATCGGAGTCTGGCAGAAGCGGGCCGGTGCCCGTGCCAGCTCTAACTGGGTCATGCGAATCGAGCTCGGAACGAAAAAGATGATGAGTCATCGTGATGAATTAGGCGATTCGTCCGTGGAGGATGCTACGTCGTCGTTCTTACCAGGAGTGGCAGATGAAAATAATACTAACGCAGTACAGACAGAATCTGGAAATATTGAGATGGACGAAGAGGACAGAGTTGCGTTGCAGATGATCGAGGAATTGCTTAACTGGAATGAATCATCCTCTTAA 693 46.75 MVHSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQASILMNGQNAKTNFPNSKNQPHDHDDQHHHHYRLPGGGDHDKVRSSSLENGSSPPLMSAKELSELLNTKLKKCCKDPSPSLTCLRLDSDNSHIGVWQKRAGARASSNWVMRIELGTKKMMSHRDELGDSSVEDATSSFLPGVADENNTNAVQTESGNIEMDEEDRVALQMIEELLNWNESSS 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11339494 11340800 + Conep07aG0175200.1 Cone7ag1701 442297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1701 230 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 157 IPR050913 -
Cone7ag1701 230 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1701 230 MobiDBLite consensus disorder prediction 56 105 - -
Cone7ag1701 230 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1701 230 MobiDBLite consensus disorder prediction 66 94 - -
Cone7ag1701 230 Pfam AP2 domain 6 55 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1701 230 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1701 230 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1701 230 CDD AP2 6 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1701 230 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677(InterPro)
Cone7ag1701 230 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Cone7ag1701 230 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1786 Cone-Chr4:13012589 Cone7ag1701 Cone-Chr7:11339494 1.95E-134 dispersed
Cone7ag1675 Cone-Chr7:11230679 Cone7ag1701 Cone-Chr7:11339494 1.54E-24 dispersed
Cone7ag1701 Cone-Chr7:11339494 Cone12ag0059 Cone-Chr12:350392 2.48E-20 dispersed
Cone16ag0650 Cone-Chr16:8006738 Cone7ag1701 Cone-Chr7:11339494 6.75E-65 wgd
Cone16ag0813 Cone-Chr16:8830663 Cone7ag1701 Cone-Chr7:11339494 1.05E-61 wgd
Cone20ag0368 Cone-Chr20:1675514 Cone7ag1701 Cone-Chr7:11339494 3.58E-17 wgd
Cone4ag1792 Cone-Chr4:13040697 Cone7ag1701 Cone-Chr7:11339494 1.95E-134 wgd
Cone7ag0635 Cone-Chr7:3242891 Cone7ag1701 Cone-Chr7:11339494 6.78E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46586 PF00160 Pro_isomerase 4.70E-36 CL0475 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1701 - - - 0.0