Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1730 ATGAATAAAGAAAATCCGGCTGCCAAAGCTGACAAGCCTACTGTGAGAATCACACGAGCACGGGCTAAAGCCTTAAGCACATTAGGAGGGGGAGTTCGCCCCTCTAAATCTTCTATTGTAGAAGATCAGAAGTGTGAACTCCGAGGAAACTCTAAAAGAGCAGCATCGGATGTGAGTAACCCTGCTGGGATTTCCACTGCTTGCCTTCAGCATAAGAAAAGGGCAGTGCTGAAAGATGTAACAAACATCTTCTGCGAAGATTCTTACAAGAACTGTATCGATCCTTATAAAGTTGAGACTACCAAGCAGGTCCTTAGAGGTCCTGCAAATATGGTGCCAAATATCTCTGTAAAAAATTCACGAGTGCATGATGATGCGAAGGAAAAATTAGCTGAACATTTGTCCAAAATAAAGGTGGTGGAATCACAAGAGCTTAAAGTAGAAGTGAATACTGAAAAAATGGAGAAAGTACTGGAAAGTTTGTGTGAGAGCGTCGGGGGATCTGTTGTAGCAGTATTTATGCATCCTATGCCTGCAAAACCACAATGCCCTAAGAATAGAGATGACGATATGGTTTGCGAGAAATTAGGAATCTCAGATGACTCGGGAATCGTTAACATTGACACAAAGACAGAAAATACCCATGCATGTTGCTTATATGCCCCTGAGATATACAATAGAATTCGTCTCACAGAGCTTGATCATAGGGCATCGACAAATTATATGGAAAAGCTGCAACAAGAAATCACTGCAAGCATGCGGGGAATTCTTGTTGACTGGCTTGTGGAGGTCTCTGAAGAGTATAAGCTGGTGCCTGATACGCTTTACCTCACGGTGAATCTCATCGATCGATTTCTTTCTAAAAATCATATTAGAAAGCAAAGACTTCAGCTTCTTGGTGTTGCATGCATGCTAATTGCCTCAAAATATGAAGAAATCTGTGCCCCACGGGTGGAAGAATTTTGCTTTATTACAGACAATACTTACAAAAAAATAGAGGTATTAGAAATGGAGAGTGGAATCTTAAACTTAGTGCATTGTCAGCTCTCTGTTCCCACAACAAAAACGTTTCTCAGGAGGTACGTTCAAGCAGCACAGGCTACTTATAAGGTTCCTTGCGAAGAACTCGAGTTTTTGGCAAACTACTTAGCAGAGTTGACTCTTGTTGAGTACAGCTTCCTAGAGTTCCTTCCTTCTCTGATAGCTGCTTCTGCTGTGTTCCTTGCCAGATGGACTCTTAACCAATCAAATCACCCATGGAATCCTACTCTACAGCACTATACCAGTTACAAAGCTTCTGAGCTGAAAACTACAGTCCTAGCCCTGGAAGATTTGCAACTCAACACTAACGGCTCCTCCCTCATCGCTATACGCCAGAAGTATCGGCAACAAAAGTTCAAGTGTGTAGCGGATTTTACCTCCTCACGGCCCATCCTATCAATTTTTTCTGAAGATTAG 1458 42.18 MNKENPAAKADKPTVRITRARAKALSTLGGGVRPSKSSIVEDQKCELRGNSKRAASDVSNPAGISTACLQHKKRAVLKDVTNIFCEDSYKNCIDPYKVETTKQVLRGPANMVPNISVKNSRVHDDAKEKLAEHLSKIKVVESQELKVEVNTEKMEKVLESLCESVGGSVVAVFMHPMPAKPQCPKNRDDDMVCEKLGISDDSGIVNIDTKTENTHACCLYAPEIYNRIRLTELDHRASTNYMEKLQQEITASMRGILVDWLVEVSEEYKLVPDTLYLTVNLIDRFLSKNHIRKQRLQLLGVACMLIASKYEEICAPRVEEFCFITDNTYKKIEVLEMESGILNLVHCQLSVPTTKTFLRRYVQAAQATYKVPCEELEFLANYLAELTLVEYSFLEFLPSLIAASAVFLARWTLNQSNHPWNPTLQHYTSYKASELKTTVLALEDLQLNTNGSSLIAIRQKYRQQKFKCVADFTSSRPILSIFSED 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11463130 11466044 + Conep07aG0178300.1 Cone7ag1730 442326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1730 485 SMART cyclin_7 259 343 IPR013763 -
Cone7ag1730 485 SMART cyclin_7 356 444 IPR013763 -
Cone7ag1730 485 FunFam Cyclin A1 340 471 - -
Cone7ag1730 485 Coils Coil 123 143 - -
Cone7ag1730 485 ProSitePatterns Cyclins signature. 254 285 IPR048258 -
Cone7ag1730 485 Gene3D - 223 470 - -
Cone7ag1730 485 PIRSF Cyclin_A_B_D_E 27 482 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cone7ag1730 485 FunFam Mitotic cyclin 6 237 337 - -
Cone7ag1730 485 PANTHER CYCLINS 202 463 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cone7ag1730 485 SUPERFAMILY Cyclin-like 212 349 IPR036915 -
Cone7ag1730 485 Gene3D - 237 350 - -
Cone7ag1730 485 Pfam Cyclin, N-terminal domain 223 349 IPR006671 -
Cone7ag1730 485 SUPERFAMILY Cyclin-like 351 472 IPR036915 -
Cone7ag1730 485 CDD CYCLIN_AtCycA-like_rpt2 352 466 - -
Cone7ag1730 485 Pfam Cyclin, C-terminal domain 352 474 IPR004367 -
Cone7ag1730 485 SMART Cyclin_C_2 352 475 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1423 Cone-Chr4:11351242 Cone7ag1730 Cone-Chr7:11463130 1.03E-95 dispersed
Cone7ag1514 Cone-Chr7:10540540 Cone7ag1730 Cone-Chr7:11463130 1.04E-94 dispersed
Cone7ag1730 Cone-Chr7:11463130 Cone7ag1934 Cone-Chr7:12340108 5.27E-52 dispersed
Cone17ag0200 Cone-Chr17:961179 Cone7ag1730 Cone-Chr7:11463130 3.20E-138 wgd
Cone20ag1212 Cone-Chr20:8063401 Cone7ag1730 Cone-Chr7:11463130 1.87E-130 wgd
Cone4ag1826 Cone-Chr4:13192809 Cone7ag1730 Cone-Chr7:11463130 3.27E-283 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1730 K06627 - cit:102630346 555.058