Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1733 ATGTCAAACAATCTTGTGTCTCAACAGTTTCTAGTACCAGGAACTCCAGTTAGCCAAAGGGAACCTATCTTTAACAATATGAACTCATCATCATTACCAGAGCTTCCAAGAGGATTGATGGACCCTGAATCAAAAGATCCTTCATTACATCTTTACTCAACAACAACCAAACATATGGAACTGATGGAACACATTTCTATTGATCCCATGCCACAAAATTTTCTGGTGTCCAACATGCAAATGGGAACTGTCAATGTAAACTCTAATAATATGGTGCCTAGACAGTATCAGATACCTTATATTCCAATGGGAGGGATTGAACACATCCTGATAAATGCAGGTGCTGGACAGTTTTCGTTGCCAGTTAAGCGGAAGTCCCCAATGGAACCTGTCAATCATAATCTTACCCCACAGCACTCATCAGTAGAGAATCAGCGTGTTGCACAACTGGAACATAGGCCGTGGTTGCAGCAGGCATCTGGACCAAATAAAAGATTGTTGCAAATGCAATACTCCTCCCCTGCTCCGGTATCACAGATTTCTTCTGGAGCAAACAAGAAAGTGATACAAGTGGAATCCATACCCAGTAGAGCTGGCCCACAACGGTCATCAGCTTTGAGAAATCAGGCTTCACAGAAAAACCCGCCTTTGAAGATGCGTAACGAGTCATTTGAATCAGTGAGGTCCAAGATGAGGGAATCCTTAACCGCTGCATTGGCCTTAGTTCAGCAGAAGGAAAACATTTTAAACCTGGGAAAAAATTCTCCGAGGGAAGGAGTGTGTCATAAGAAGGAAAATGCTAAACCAGCTTCTGCTGCAGCTGATGGAGATGGTTTTGTATCCGAAGGATCCAGGGAATCTATCTGCTTCATTGAAGATTCCTCTGCTAATCCTAGCAATGTGGACCAGAAGGCATTACATAAGACTTCAGAGCCTGCGAATTCTAGCGTCATACAGACCTTGAGATATGGAGGGCCAGATTATCAGTTATCATATAAATGCATTTCTGCTGGGGAAGAAATTGTCAAAGACGAACTTTTGCAAGGAAATGGGCTTGCTTGGGTGATGGATTCTTCCATGGAGAAGGATGAAAGAAGGGAAATCCAGTCTGCTGAGAAACATAAGCCAGATCTCAGGGTAGTGGATTTTGGCCAGGGAGGCAAAGCTCCTGAGAATTTAGCTTTCGAAATTGAGAATGAGCTATTCAAGTTATTTGGCGGTGTGAATAAGAAATACAAGGAAAGGGGACGCTCTCTTCTGTTTAATCTAAAAGATCGAAACAATCCTGCACTGAGAGAGAGGGTTATGTCTGGTCAAATCCCTCCGAAACAATTGTGTTCTATGACCCCTGAGGAACTTGCTTCGGAGGAGCTTACTCAGTGGCGAGTGGCAAAGGCTGAGGAGTTCGCACAAATGATAGTTTTACCCGACTCAGGAGTTGATATGAGGCGATTTGTTAAAAAAACACACAAGGGTGATATTGAAGTTCACGTTGAGCATGACGATAGTGTTTCTGTGGAGGTTCCTGTGAATGCAAACTCATTTTCCCTGACTCCACGAAATGATATAGAGACAAAAGAGCCATCTCAAACTAAACCCAATAGTTGTAAGGATAGGGAGAATGCTGATAGTGAGAAAAATAATGTAGAAGACAAGGATGCTTCATTGACTCTTATGATTCCACCAAATGATAGCTCTGACTTGATGCTAGATGATGCACTGAAGGATGCAGAATTTCTTCCTCCAATCGTATCCCTAGATGAGTTCATGGAGTCCCTTAATGCAGAACCCCCATTCGAAAATTTGTCAGCTGATACTGGAAAACTGACCCACGTTGCAGAGGAAGACAACTCTGAGGCTGGTGTTGAGACGAAATCTTCTGGTGAACCCACAATAGATCCTGCTGATTCAACCATAGACAAAAATGACAATAGTGATGAACATATCTCAAAACCCGATGCCAAGGCTGATGATGATACTGATAAGAAATCCAGTGAGAATCATAATGATGCACTTTGTGAGGATAATAATAGTGATGTGAAATCAAGTGACAGCCATGTAAAGATAGGAGCGGAATCGCCATCCAGCATTTCAAAGGTTGAACATGTCTGGGAAGGCAAACTGCAGCTGAGTTTGGTAGCCACATGCTCTGTTGTGGGAACCTTTATAAGTGGTGAAAAAGCATCTAGAAAAGAGTGGCCTGGCTCTTTCGAGATCAAGGGACGAGTTAGACTCGATGCATTCCAGAAGTTTCTCCAAGGGCTTCCACTGTCTCGTAGCCGTGCGGTCATGGTTCTACATTTTGATGTGAAGGAGGGATGGCCTGAAAGTGAGCGTTCAAGTCTGAAAGAGGCTGCAGATTCCTACGTGTTGGATGAGAGAGTGGGTATCGCTGAGCCTTCATCTGGGGTGGAGCTTTATTTTTGCCCACCTCATAAAAGAATGCTTGAAATGCTTACTCCCATTCTCCAAAAAGACCACGTCGAATCACTTAATGCTATTAATGTTGGGCTTATCGGTGTTGTTGTATGGAGAAAAGCTCATTACACATCATCATCATCATCTACTATATCACCCACCTCCACTAACAACTACTACAAACACAGCTCTAAAAATCAACATTTCACTACTCGTAGAAAGCATCACGATGCTATTGCTACTGCTACTACTACTACTAACATGAATGCTAATAATTTCTTCAATAGACAGCCTCATGCCTACTCTCTTTCCACCCATAAACCCTTGCCCAATGAAGATGATGACGATGTACCTCCCGGGTTTGGCCCCTCAGCTCGGGATGAAGATGACCTTCCCGAGTTCAAATTTTCTGGGCCATCCTCATCCCGGCTCTCTAATCGGGGCTCGGGACGGTCCCCTTATTACCCTGTTTCTCAAACCCCTCCCCGGCAAGTAGAGCAAATGAGAGAACTTGTACAGAAATATGGACAAACTAGATCAGATAGCCCTAGAAATTTGCCAACTAAGCCATGGAATGAAGACGATGATGACATACCGGAATGGCAGCCCTCTCACCCGATCCCAACTCAGACCATCCCGATGATAAGACCCCACCACCATTTGGTAGGACAAAGTCAGAGTTTACCTCATCAAAATATATCAATGACCTCTATACAACCACCTTTGCACGCTTCAATGAATGTTGATTCTTTATGGCACCAGCAAGGACAAGGACAAGGAGCCTGGTGGGCTCCTCCGGTCCATGGAAATTTGAATGGTCAGCCCAATGGGGTGCAGTATTATGGAACAGCAGCGCAGCCAGGACCGGCCTGGCGAGATAACGCCGCCTAA 3309 44.18 MSNNLVSQQFLVPGTPVSQREPIFNNMNSSSLPELPRGLMDPESKDPSLHLYSTTTKHMELMEHISIDPMPQNFLVSNMQMGTVNVNSNNMVPRQYQIPYIPMGGIEHILINAGAGQFSLPVKRKSPMEPVNHNLTPQHSSVENQRVAQLEHRPWLQQASGPNKRLLQMQYSSPAPVSQISSGANKKVIQVESIPSRAGPQRSSALRNQASQKNPPLKMRNESFESVRSKMRESLTAALALVQQKENILNLGKNSPREGVCHKKENAKPASAAADGDGFVSEGSRESICFIEDSSANPSNVDQKALHKTSEPANSSVIQTLRYGGPDYQLSYKCISAGEEIVKDELLQGNGLAWVMDSSMEKDERREIQSAEKHKPDLRVVDFGQGGKAPENLAFEIENELFKLFGGVNKKYKERGRSLLFNLKDRNNPALRERVMSGQIPPKQLCSMTPEELASEELTQWRVAKAEEFAQMIVLPDSGVDMRRFVKKTHKGDIEVHVEHDDSVSVEVPVNANSFSLTPRNDIETKEPSQTKPNSCKDRENADSEKNNVEDKDASLTLMIPPNDSSDLMLDDALKDAEFLPPIVSLDEFMESLNAEPPFENLSADTGKLTHVAEEDNSEAGVETKSSGEPTIDPADSTIDKNDNSDEHISKPDAKADDDTDKKSSENHNDALCEDNNSDVKSSDSHVKIGAESPSSISKVEHVWEGKLQLSLVATCSVVGTFISGEKASRKEWPGSFEIKGRVRLDAFQKFLQGLPLSRSRAVMVLHFDVKEGWPESERSSLKEAADSYVLDERVGIAEPSSGVELYFCPPHKRMLEMLTPILQKDHVESLNAINVGLIGVVVWRKAHYTSSSSSTISPTSTNNYYKHSSKNQHFTTRRKHHDAIATATTTTNMNANNFFNRQPHAYSLSTHKPLPNEDDDDVPPGFGPSARDEDDLPEFKFSGPSSSRLSNRGSGRSPYYPVSQTPPRQVEQMRELVQKYGQTRSDSPRNLPTKPWNEDDDDIPEWQPSHPIPTQTIPMIRPHHHLVGQSQSLPHQNISMTSIQPPLHASMNVDSLWHQQGQGQGAWWAPPVHGNLNGQPNGVQYYGTAAQPGPAWRDNAA 1102
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11472570 11477958 + Conep07aG0178600.1 Cone7ag1733 442329

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1733 1102 SMART mid_6 363 464 IPR003618 GO:0006351(InterPro)
Cone7ag1733 1102 MobiDBLite consensus disorder prediction 852 871 - -
Cone7ag1733 1102 Gene3D - 358 456 IPR036575 GO:0006351(InterPro)
Cone7ag1733 1102 MobiDBLite consensus disorder prediction 196 219 - -
Cone7ag1733 1102 SUPERFAMILY Elongation factor TFIIS domain 2 389 457 IPR036575 GO:0006351(InterPro)
Cone7ag1733 1102 MobiDBLite consensus disorder prediction 614 696 - -
Cone7ag1733 1102 MobiDBLite consensus disorder prediction 852 880 - -
Cone7ag1733 1102 Pfam SPOC domain 696 845 IPR012921 -
Cone7ag1733 1102 MobiDBLite consensus disorder prediction 907 1003 - -
Cone7ag1733 1102 Pfam Transcription factor S-II (TFIIS), central domain 387 468 IPR003618 GO:0006351(InterPro)
Cone7ag1733 1102 CDD SPOC_TFIIS 703 844 - -
Cone7ag1733 1102 MobiDBLite consensus disorder prediction 525 552 - -
Cone7ag1733 1102 MobiDBLite consensus disorder prediction 914 940 - -
Cone7ag1733 1102 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 119 854 - -
Cone7ag1733 1102 MobiDBLite consensus disorder prediction 513 559 - -
Cone7ag1733 1102 MobiDBLite consensus disorder prediction 195 221 - -
Cone7ag1733 1102 MobiDBLite consensus disorder prediction 639 686 - -
Cone7ag1733 1102 ProSiteProfiles TFIIS central domain profile. 360 481 IPR003618 GO:0006351(InterPro)
Cone7ag1733 1102 MobiDBLite consensus disorder prediction 944 993 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1733 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1054 Cone-Chr17:7931645 Cone7ag1733 Cone-Chr7:11472570 5.52E-224 wgd
Cone20ag0650 Cone-Chr20:3935068 Cone7ag1733 Cone-Chr7:11472570 1.46E-216 wgd
Cone4ag1829 Cone-Chr4:13203255 Cone7ag1733 Cone-Chr7:11472570 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g372 Blo01g01364 . Bda01g00724 . . . . Bma01g02151 . . . . . . . . . . . . . . . . Cla05g01761 Cam05g1880 Cec05g1890 Cco05g1953 Clacu05g1870 Cmu05g1752 Cre05g1880 . Cone7ag1733 . . . . Chy04g00341 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g00380
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004122 1 1 1 1 1 1 2 1 1 1 1 1 2 1 0 2 1 4 2 1 1 1 1 2 1 1 1 6 1 1 42