Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1745 ATGTCTACGCCATCTGAAAACCCCATTGAAGAACAGAATCAGCAACCACCAGTGGATGAAGATGAATCATTGAAATCCGTTAGCAAGAAAGCCGCCAAGAAAGAAGCTGCCAAATTGGAAAAACAGCGCCGACGGGAAGAAGCAGCTGGGGCGGCTCTATCATCTCTTTCCGTCGAGGAAGATCCGCTCTCCGGAAACTATGGTGAGGTTCCGATCTTGGAGCTGCAATCTAAGGAGGCGAGGGACTTCCGTGACTGGACTAATGTCAGTAAGCTCGCCGATGAGCTGAAAGACAAGTCTGTGCTCATTCGTGGGCGCGTGCAGACGATTCGTGCTGTGGCCAAGAAGATGGCCTTCTTGGTGCTCAGAGAGGACGGATTCACGGTTCAGTGCGTCGTTTCAGAGCAACCTGGGGTTGTTAGCCGCCAGATGGTGAAGTTCGTTGCAGGATTGAGCCGTGAATCCTTTGTGGACGTCGAAGGCGTCGTGTCTGTTCCTGGGGTTGCCATCAAGGGTGCCTCACAGCAGGTGGAAGTTCAAGTGAGGAAATTATATTGTGTGAATAAGGCTATCCCAACACTTCCTATAAATGTCGAGGATGCTGCACGAAGTGAAATTGATATTGAAAAGGCATTGCAGGCTGGAGAACAACTCGTACGTGTTAATCAGGATACACGGTTGAACTATAGAGTCATTGACCTCCGTACAGCAGCTAACCAAGGAATATTTCGCATTCAAAGTCAAGTTTCGATGATATTTAGACAATTCCTATTCTCTGAAGGCTTTGTTGAAATTCATACACCAAAATTGATAGCTGGATCAAGCGAAGGAGGAGCTTCAGTCTTTAAGTTAGATTATAAAGGTCAACCTGCATGCCTAGCTCAGTCACCTCAGCTTCACAAGCAAATGGCAATCTGTGGTGATTTCAGGCGTGTGTTTGAGATAGGTCCCGTTTTCAGAGCAGAAGATTCATACACTCACAGACATTTGTGTGAGTTCACAGGTCTTGATGTTGAAATGCAGATTAAGACGCATTATTTTGAGGTGATGGATATTGTGGACTGTTTATTTGTCGCAATGTTCGACAGTTTGAATCGTGACTGTAAGAAAGAGCTCGAAGCTGTGGATAGACAATATCCATTTGAACCTTTGAAGTACTTGCGCCAGACTTTGCGGCTGACATTTGAAGAAGGGATTCAGATGCTAAAGGATGATGGGGTTGAAGTTGACCCTTTTGGGGACCTAAACACTGAGGCGGAGAGGAAACTTGGTCAGCTGGTTTTGGAGAAGTATGGCACAGAGTTCTATATTCTCCATCGGTATCCTCTTGCAGTTAGACCATTCTACACAATGCCCTGCTATGATAACCAAAAATACAGCAACTCATTTGATGTCTTTATTCGAGGGGAGGAGATAATTTCAGGAGCCCAGCGTGTCCATGTGCCAGAGCTCTTGGCAGAACGTGCACAGGCATGTGGAATCGAAGTGAAAACAATTGAAACATACATTGATTCTTTCAGATATGGTGCACCTCCACATGGTGGGTTTGGAGTCGGGTTGGAGCGAGTTGTTATGCTTTTCTGCGGCCTGAATAACATCCGGAAAACATCTATGTTCCCTCGTGATCCACAGAGGATTGCCCCATAG 1647 46.27 MSTPSENPIEEQNQQPPVDEDESLKSVSKKAAKKEAAKLEKQRRREEAAGAALSSLSVEEDPLSGNYGEVPILELQSKEARDFRDWTNVSKLADELKDKSVLIRGRVQTIRAVAKKMAFLVLREDGFTVQCVVSEQPGVVSRQMVKFVAGLSRESFVDVEGVVSVPGVAIKGASQQVEVQVRKLYCVNKAIPTLPINVEDAARSEIDIEKALQAGEQLVRVNQDTRLNYRVIDLRTAANQGIFRIQSQVSMIFRQFLFSEGFVEIHTPKLIAGSSEGGASVFKLDYKGQPACLAQSPQLHKQMAICGDFRRVFEIGPVFRAEDSYTHRHLCEFTGLDVEMQIKTHYFEVMDIVDCLFVAMFDSLNRDCKKELEAVDRQYPFEPLKYLRQTLRLTFEEGIQMLKDDGVEVDPFGDLNTEAERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCYDNQKYSNSFDVFIRGEEIISGAQRVHVPELLAERAQACGIEVKTIETYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSMFPRDPQRIAP 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11554366 11557801 + Conep07aG0179800.1 Cone7ag1745 442341

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1745 548 MobiDBLite consensus disorder prediction 22 45 - -
Cone7ag1745 548 SUPERFAMILY Nucleic acid-binding proteins 65 193 IPR012340 -
Cone7ag1745 548 NCBIfam aspartate--tRNA(Asn) ligase 92 548 IPR004523 GO:0000166(InterPro)|GO:0004815(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006422(InterPro)
Cone7ag1745 548 PANTHER ASPARTYL-TRNA SYNTHETASE 19 548 IPR004523 GO:0000166(InterPro)|GO:0003723(PANTHER)|GO:0004815(PANTHER)|GO:0004815(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0005829(PANTHER)|GO:0006422(InterPro)|GO:0006422(PANTHER)|GO:0017101(PANTHER)
Cone7ag1745 548 CDD AsxRS_core 220 544 - -
Cone7ag1745 548 Hamap Aspartate--tRNA(Asp) ligase [aspS]. 84 548 IPR004523 GO:0000166(InterPro)|GO:0004815(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006422(InterPro)
Cone7ag1745 548 CDD AspRS_cyto_N 101 200 - -
Cone7ag1745 548 PRINTS Aspartyl-tRNA synthetase signature 503 517 IPR002312 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Cone7ag1745 548 PRINTS Aspartyl-tRNA synthetase signature 293 305 IPR002312 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Cone7ag1745 548 PRINTS Aspartyl-tRNA synthetase signature 310 323 IPR002312 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Cone7ag1745 548 PRINTS Aspartyl-tRNA synthetase signature 463 479 IPR002312 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Cone7ag1745 548 FunFam Aspartate--tRNA ligase, cytoplasmic 195 548 - -
Cone7ag1745 548 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 243 540 IPR006195 -
Cone7ag1745 548 Gene3D - 59 193 IPR012340 -
Cone7ag1745 548 MobiDBLite consensus disorder prediction 1 45 - -
Cone7ag1745 548 Coils Coil 29 49 - -
Cone7ag1745 548 Pfam OB-fold nucleic acid binding domain 101 184 IPR004365 GO:0003676(InterPro)
Cone7ag1745 548 SUPERFAMILY Class II aaRS and biotin synthetases 218 547 IPR045864 -
Cone7ag1745 548 Gene3D Bira Bifunctional Protein; Domain 2 195 548 IPR045864 -
Cone7ag1745 548 FunFam Aspartyl-tRNA synthetase, cytoplasmic 63 193 - -
Cone7ag1745 548 Pfam tRNA synthetases class II (D, K and N) 222 542 IPR004364 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1745 K22503 - - csv:101222217 879.011
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1839 Cone-Chr4:13256458 Cone7ag1745 Cone-Chr7:11554366 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g255 Blo01g01355 . Bda01g00715 . . . . Bma01g02143 . . . . Car09g00436 . . . Cpe06g00372 . . . . . . . . . . . . . . Cone4ag1839 Cone7ag1745 . . Lsi04g02172 Csa03g04379 Chy04g00323 . . . . . . . . . Sed05g1660 . Cmo09g00498 . . . . . . Bhi09g02315 Tan01g3700 Cmetu04g3175 . Hepe01g2064 Mch11g0600 . . . . . . . . . . . Cme04g00363
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007164 1 1 2 1 1 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36