Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1751 ATGAATTCGAGCTCAGGATCCCACACCAGATCCACATCGCCGTCAATCCGCCGTGTCCCTGTTCTGAACTCTGACGAAATGGATCGGGTCACCGAAGAAACATTTCAACGGTACTCTTTATCGTCTTCTTCCTTGAAGAGAAAAGGCAAAGGCGTAGCCATTGTTTGGTTCAGAAATGATCTCAGAGTGCTGGACAATGAAGCTCTGTACAAAGCCTGGGCTTCTTCTGAAGCTGTGTTGCCAGTATATTGTGTTGATCCTCGGCTCTTTGGCTCCACCTATTACTTTGGATTCCCTAAAACCGGAGCTCTAAGAGCACAGTTTCTCATCGAATCTTTGGCTGATTTCAAGAACAACTTAATCAAACGAGGTCTTAACTTGCTCATTCGGCATGGAAAGCCTGAAGAAATTCTCCCTTCTCTTACTAAAACTCATAATGCTCATACAGTATATGCTCAGAAAGAAACTTGTAGTGAGGAGCTAAATGTCGAAAGATTGGTCGGTAAAGGTCTTGAGAACAAATTAAAACTTGTTTGGGGAACCACAATGTATCACATTGACGACCTCCCATTCAGTACAAATGATCTACCTGACGTTTATACTCAGTTCCGAAAATCGGTTGAGGCGAAATGTGACATTAGAGGCTGCATCAGAGTCCCAACTTCTCTCGGGCCACCACCGAGCATTGATGATTGGGGATGTGTTCCCTCAATAGATCAGCTGGGACTTCATTCTTCCAATGTTACAAGAGGGATGAAGTTTATTGGAGGCGAGAGTGCAGCTCTAAGCAGAATACACGAGTACTTTTGGAAAAAGGATTTGCTAAGGATATATAAAAACACGAGAAATGGGATGTTAGGGCCTGATTACTCAACAAAACTCTCTCCGTGGCTTGCTATGGGATGTGTCTCTCCCCGTCTCATTCATGAAGAGGTGAAGAGATATGAAAAGGAAAGGCAAGCTAATGAATCTACATACTGGGTTTTGTTTGAATTAATATGGAGGGATTACTTCAGGTTTCTTTCTGTCAAATACAAGAACTCCCTTTTCCAGCTAGGTGGCCCGAGAAAAGTGGAGTCCAGATGGAGCCAAAACAAGGTTTTGTTTGAATTCTGGAGAGATGGATGTACTGGGTATCCTCTCATAGATGCCAATATGAAAGAACTGTCAACAACTGGCTTCATGTCAAACCGAGGACGGCAGATTGTGTGCTCCTTTCTGGTCAGAGGTTTGGGTATTGACTGGCGTATGGGAGCTGAATGGTTCGAGACTTGCCTTTTGGATTATGACCCGAGTTCAAATTACGGGAATTGGACATATGGTGCTGGAGTTGGTAACGACCCTAGAGAAGGTCGGTACTTCAGTATCCCCAAGCAAGCACATACATATGATCCTGAAGGTGAATATGTTGCATATTGGTTACCAGAGCTACAAATGCTACCCAAAGATAAGAGGCACTTTCCTGGGAAATCGTACACCAAGCAAATTGTACAACTCAAGTTTGGCAATTCTTATAAGCCCCAGAATCAAGACAAGGCCATGTCTGCAAGAAGAAACAACTCCGGAGTGAGACAAGGATAA 1581 43.77 MNSSSGSHTRSTSPSIRRVPVLNSDEMDRVTEETFQRYSLSSSSLKRKGKGVAIVWFRNDLRVLDNEALYKAWASSEAVLPVYCVDPRLFGSTYYFGFPKTGALRAQFLIESLADFKNNLIKRGLNLLIRHGKPEEILPSLTKTHNAHTVYAQKETCSEELNVERLVGKGLENKLKLVWGTTMYHIDDLPFSTNDLPDVYTQFRKSVEAKCDIRGCIRVPTSLGPPPSIDDWGCVPSIDQLGLHSSNVTRGMKFIGGESAALSRIHEYFWKKDLLRIYKNTRNGMLGPDYSTKLSPWLAMGCVSPRLIHEEVKRYEKERQANESTYWVLFELIWRDYFRFLSVKYKNSLFQLGGPRKVESRWSQNKVLFEFWRDGCTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRGLGIDWRMGAEWFETCLLDYDPSSNYGNWTYGAGVGNDPREGRYFSIPKQAHTYDPEGEYVAYWLPELQMLPKDKRHFPGKSYTKQIVQLKFGNSYKPQNQDKAMSARRNNSGVRQG 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11576842 11580393 - Conep07aG0180400.1 Cone7ag1751 442347

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1751 526 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 351 505 - -
Cone7ag1751 526 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 51 183 IPR006050 -
Cone7ag1751 526 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 251 499 IPR036134 -
Cone7ag1751 526 Gene3D HUPs 14 180 IPR014729 -
Cone7ag1751 526 PRINTS DNA photolyase signature 397 415 IPR002081 -
Cone7ag1751 526 PRINTS DNA photolyase signature 436 450 IPR002081 -
Cone7ag1751 526 PRINTS DNA photolyase signature 377 393 IPR002081 -
Cone7ag1751 526 PANTHER CRYPTOCHROME 48 508 IPR002081 GO:0000719(PANTHER)|GO:0003677(PANTHER)|GO:0003904(PANTHER)|GO:0071949(PANTHER)
Cone7ag1751 526 Pfam DNA photolyase 53 212 IPR006050 -
Cone7ag1751 526 Gene3D - 181 350 - -
Cone7ag1751 526 Pfam FAD binding domain of DNA photolyase 329 520 IPR005101 -
Cone7ag1751 526 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 50 229 IPR036155 -
Cone7ag1751 526 MobiDBLite consensus disorder prediction 505 526 - -
Cone7ag1751 526 NCBIfam DASH family cryptochrome 52 477 IPR014133 GO:0003913(InterPro)|GO:0006281(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1751 K25656 - - mdm:103400222 840.106
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1336 Cone-Chr4:10931992 Cone7ag1751 Cone-Chr7:11576842 6.15E-38 dispersed
Cone7ag1593 Cone-Chr7:10895491 Cone7ag1751 Cone-Chr7:11576842 2.11E-34 dispersed
Cone4ag1845 Cone-Chr4:13273402 Cone7ag1751 Cone-Chr7:11576842 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g224 . Blo12g00706 . Bda03g00042 . . Bma04g00041 . . . Cma01g01604 . Car09g00443 . . . Cpe06g00379 . . . . . . . Cla05g01785 Cam05g1904 Cec05g1915 Cco05g1978 Clacu05g1897 Cmu05g1778 Cre05g1906 Cone4ag1845 Cone7ag1751 . . . Csa03g04387 Chy04g00315 . . . . . . Bpe04g00031 . . Sed09g1246 Cmo01g01651 Cmo09g00506 Cma09g00556 . . . . Cpe02g00374 Bhi09g02328 Tan01g3711 Cmetu01g0800 . Hepe01g2073 Mch11g0610 . . . . . . . . . . . Cme04g00288
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007699 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 36