Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1758 ATGCCAGGTCTAACGTGCAACGCCTGCAACAAAGAATTTAATGACGATTCGGAGCAAAAGCTCCATTACAAGTCGGAATGGCACCGCTACAATCTCAAGCGCAAGGTTGCTGGGGTTCCTGGTGTTACAGAAGCACTGTTTGTAGCTAGACAATCTGCACTTGCTCAGGAGAGCAATAAGTCCAATGAAACCCCAATGTTGTACTCTTGTGGTCTTTGTGGCAAAGGGTATAGAAGTTCCAAAGCGCATGCTCAGCATCTTCAATCTAGAAGTCACATCATGCGAGCTTCTAATGGAACAAACACTGAGGAAGAGGAGAAGGCCATAATTAAACCCATCTCACGTCGAGTCTTGAATAAGCCTCCTCCCCAACAAAGAGGTGGTGGGGAGGACGAAGAGAGTGAAGGGAGTGAAGATGAGTGGGAGGAAGTTGATTCAGAGGAACAATTGGTTGAAGAAGCTGCCTCGTCCTTGAATGGATTGAATATGAGTAAGATTCCTGAGGACATGGATGAGGATGAGGATGAAGATGAGGACATGGTGGTTGATATAGATCCATCTTGCTGCTTTATGTGTGATCTTGACCACGATACCATTGAAAGTTGCATGGTCCACATGCACAAGTATCATGGGTTCTTTATACCTGATGTTGATTTTCTCAAAGATCCAAAAGGTCTCCTTACTTATCTTGGCTTGAAGGTGAAGAGAGATTTCATGTGCCTATACTGCAACGAAAGATGTCATCCTTTTAACAGCTTGGAAGCTGTTAGGAAGCATATGGCAGCAAAAAGCCACTGCAAAGTGCATTATGGTGATGGTGGGGATGAGGAAGAAGTTGAGCTGGAAGAATTTTATGATTACAGCAGCAGTTACGTGGATGAGAATGGGACACAGCTAGTTGCATCAGGTGATATGGCCAAGACTGTAGAACTTGGAAGTGCTGGGTCCGAGCTCATCATAACTAGGAAGGCCGATAGTGGGGTCTCAACCAAAACACTTGGATCGCGAGAATTTTTGCGATATTATCGTCAGAAACCCCGTCCTTCCCCTATGAATGATATGGCCATAACTGCTGCCTTGGCTTCAAGGTATAAGAGCATGGGTTTGACAACTGTGCAATCAAAGCAGAGGATGGTGAGGATGAAGGTGATGAAAGAAATGAATAGATTGGGATTGGAGACAATGCGGACCAAGATCGGATTGAAGAATAATAAAATCCGTAACCTACCCAATAATGTCCCATATTAA 1248 44.47 MPGLTCNACNKEFNDDSEQKLHYKSEWHRYNLKRKVAGVPGVTEALFVARQSALAQESNKSNETPMLYSCGLCGKGYRSSKAHAQHLQSRSHIMRASNGTNTEEEEKAIIKPISRRVLNKPPPQQRGGGEDEESEGSEDEWEEVDSEEQLVEEAASSLNGLNMSKIPEDMDEDEDEDEDMVVDIDPSCCFMCDLDHDTIESCMVHMHKYHGFFIPDVDFLKDPKGLLTYLGLKVKRDFMCLYCNERCHPFNSLEAVRKHMAAKSHCKVHYGDGGDEEEVELEEFYDYSSSYVDENGTQLVASGDMAKTVELGSAGSELIITRKADSGVSTKTLGSREFLRYYRQKPRPSPMNDMAITAALASRYKSMGLTTVQSKQRMVRMKVMKEMNRLGLETMRTKIGLKNNKIRNLPNNVPY 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11612266 11615535 - Conep07aG0181100.1 Cone7ag1758 442354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1758 415 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 97 IPR013087 -
Cone7ag1758 415 PANTHER ZINC FINGER PROTEIN 622 1 413 IPR040025 GO:0030687(PANTHER)|GO:0042273(PANTHER)
Cone7ag1758 415 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone7ag1758 415 MobiDBLite consensus disorder prediction 99 113 - -
Cone7ag1758 415 Gene3D Classic Zinc Finger 4 92 - -
Cone7ag1758 415 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Cone7ag1758 415 MobiDBLite consensus disorder prediction 132 150 - -
Cone7ag1758 415 SMART c2h2final6 238 265 IPR013087 -
Cone7ag1758 415 SMART c2h2final6 68 92 IPR013087 -
Cone7ag1758 415 SMART c2h2final6 4 28 IPR013087 -
Cone7ag1758 415 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Cone7ag1758 415 MobiDBLite consensus disorder prediction 83 98 - -
Cone7ag1758 415 MobiDBLite consensus disorder prediction 83 177 - -
Cone7ag1758 415 ProSitePatterns Zinc finger C2H2 type domain signature. 70 92 IPR013087 -
Cone7ag1758 415 Pfam Zinc-finger double-stranded RNA-binding 5 29 IPR022755 -
Cone7ag1758 415 Pfam C2H2 type zinc-finger (2 copies) 189 291 IPR041661 -
Cone7ag1758 415 SUPERFAMILY beta-beta-alpha zinc fingers 172 289 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1854 Cone-Chr4:13307675 Cone7ag1758 Cone-Chr7:11612266 6.79E-260 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46590 PF00689 Cation_ATPase_C 2.40E-43 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1758 K14816 - rcu:8282063 595.504