Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1763 ATGGATGATTACTCGGCTGAGAAAGTTATTCATGGGCTTGTTGTTTCTGGAAATGGATCTGGTTTAGTTTTGAGGGATAATGTGAGCAATAGAGATCGAAATACTCGAAATTGTAGCCGTAGCCGCCTCAACTGCAGTGCTCGAATTAACTCCATGAAGAGTTCTCAAATTGGCTCTTCGGTGAAAGCGAAGTCAATAAGCCCATCCGCCCACACTTCCTCTAGTAAGAAAGAACCAGTCAGAATATCCTCTAGAACTTGTCCTTCTTCAACCACCAATCTCAAGAAACCATCAAACAAGATTATGAGGAAGTTGGAGTCATCTTCTCAAAATGGATCAGAAGTTTCAGAATCCCTCACCCCACTAGGAAAGATACGAAGGGAGCCCACATCAATGGAAGTGGGAAGGTCCAGTATTGCCTCAAGTGCAAGACATCAGACGTATAGTCAAAGAACTAGAATTCATAATCAGGATAAAAATACTAGTGGTGGTTCATTTTTTTCTTCAAGATCTAAAAGTTCAGCTCAATCAACACCTGTCAGTACTAGCAAGCACAGTTTGAGAAATCTCAGATGCAATCCAATATCTGATATTGTTTTGTCTGGTTGTTCTTCATCCAATCCTAATTCCAATAGAACAGAATACATGGTAGATAAAAGAACTTCTGATGATGGAGAAAGTAGTAAAGGAAAGAAAATGAGTGGGTCATCCTTGAAAAATACCCGTCCTGTTTGTCGCATCTCTGTTCAGGATAAAGAACGAGCCAATAAAGTGGGTCCTTCTCACCTGGAAAGTTCTGTTCGACCCAATGGGAGTAAGAGATCTATAAGTGGGAACACAAGTTCTGTTCCATTTCCTAATGGAGGAACGGGAAAGAAACTCTCTTTGGATGAATCACATGCTATGATCTCAAATTTTCCTCAACCATACCTTTCTATTGATAGAAATGCTTCAAGACGTTCGACATATAGTAGATCATGTGATAACAGCGAGAGTTCCAGTTTTTTACGAGCCTCCTCTTTGTCTGAAACTGGATGGACCAGTTCTTCAGTAAGTAGTGATGGCTCCAGAAACAGTAACACGGATGGATTTATGGAGGTACTGTTGGCACTGGAAAGACTTGATCCTAATCAAGAGTTAACTTATGAGCAAGCATTGTCTTTGGAAACCAATACGTTTCTTAGTGGCTTAAACTTCTATGATAGGCACAGAGACATGAGATTGGACATTGATCACATGTCATATGAGGAATTATTGGCTCTAGAAGAGAGAATGGGAACTGTTAGTACAGCAGTGCCAGAGGAAACTTTATCGGAATGTCTTGAGAGAAGCTTATTTCCCTGTTGTCTTCCAGAAGAAGATGCAGCCATGATTGCCAATGAGGATAATGTATTCGATGTTAAATGTTGCATTTGCCAGGAAGAGTATGATAGCGGAGATGAAATTGGAAGGCTGCAATGTGAGCATAGGTTTCATCATGAGTGCATACGAGAATGGCTTCGGATGAAGAACTGGTGCCCTATCTGCAAAACTTCGGCTGCAGTCTCGTCAGAATCTTCATCCTAG 1566 41.0 MDDYSAEKVIHGLVVSGNGSGLVLRDNVSNRDRNTRNCSRSRLNCSARINSMKSSQIGSSVKAKSISPSAHTSSSKKEPVRISSRTCPSSTTNLKKPSNKIMRKLESSSQNGSEVSESLTPLGKIRREPTSMEVGRSSIASSARHQTYSQRTRIHNQDKNTSGGSFFSSRSKSSAQSTPVSTSKHSLRNLRCNPISDIVLSGCSSSNPNSNRTEYMVDKRTSDDGESSKGKKMSGSSLKNTRPVCRISVQDKERANKVGPSHLESSVRPNGSKRSISGNTSSVPFPNGGTGKKLSLDESHAMISNFPQPYLSIDRNASRRSTYSRSCDNSESSSFLRASSLSETGWTSSSVSSDGSRNSNTDGFMEVLLALERLDPNQELTYEQALSLETNTFLSGLNFYDRHRDMRLDIDHMSYEELLALEERMGTVSTAVPEETLSECLERSLFPCCLPEEDAAMIANEDNVFDVKCCICQEEYDSGDEIGRLQCEHRFHHECIREWLRMKNWCPICKTSAAVSSESSS 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11634254 11637663 - Conep07aG0181600.1 Cone7ag1763 442359

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1763 521 ProSiteProfiles Zinc finger RING-type profile. 469 510 IPR001841 -
Cone7ag1763 521 SUPERFAMILY RING/U-box 468 513 - -
Cone7ag1763 521 MobiDBLite consensus disorder prediction 134 186 - -
Cone7ag1763 521 MobiDBLite consensus disorder prediction 49 118 - -
Cone7ag1763 521 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 33 513 IPR045191 GO:0061630(InterPro)|GO:0061630(PANTHER)
Cone7ag1763 521 MobiDBLite consensus disorder prediction 216 230 - -
Cone7ag1763 521 Pfam Ring finger domain 468 510 IPR001841 -
Cone7ag1763 521 MobiDBLite consensus disorder prediction 263 288 - -
Cone7ag1763 521 MobiDBLite consensus disorder prediction 200 215 - -
Cone7ag1763 521 MobiDBLite consensus disorder prediction 200 294 - -
Cone7ag1763 521 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 453 517 IPR013083 -
Cone7ag1763 521 MobiDBLite consensus disorder prediction 49 186 - -
Cone7ag1763 521 SMART ring_2 469 509 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1763 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0178 Cone-Chr6:850605 Cone7ag1763 Cone-Chr7:11634254 9.13E-23 dispersed
Cone7ag1763 Cone-Chr7:11634254 Cone9ag0203 Cone-Chr9:865854 2.05E-24 dispersed
Cone17ag1078 Cone-Chr17:8059314 Cone7ag1763 Cone-Chr7:11634254 6.45E-99 wgd
Cone20ag0634 Cone-Chr20:3811066 Cone7ag1763 Cone-Chr7:11634254 3.16E-94 wgd
Cone4ag1858 Cone-Chr4:13328339 Cone7ag1763 Cone-Chr7:11634254 1.67E-284 wgd
Cone6ag1591 Cone-Chr6:12367810 Cone7ag1763 Cone-Chr7:11634254 3.18E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g200 Blo01g01341 . Bda01g00701 . . . . Bma01g02125 . Cmo12g00245 . Cma05g00629 Car09g00453 Car12g00277 Sed01g1303 Cpe07g00253 Cpe06g00391 Bhi04g01083 Tan02g2620 Cmetu03g2117 . Hepe10g0318 . Lcy13g1351 . . . . . . . . Cone7ag1763 . . Lsi04g02195 Csa03g04405 Chy04g00296 . Blo17g00044 . . Bda13g01298 . . Bma01g01312 Bma02g00056 . . Cmo09g00517 . Cma12g00293 Car01g01191 . . . Bhi09g02366 Tan01g3734 . . . . . . . . . . . . . . Chy03g01193 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0029825 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2