Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1764 ATGCTGCCACCATTTTTACGAACAATGTTTCTGATCCATACTTTCTTGCCGGCTCATTCACCACAGCATAAATATTTTCACTTCTTCTGCATCTTTTCCTCTACCTCCTCGTCTTCCTCTTCTTCATCTCCTCCTCTTTCAACTGCTTCTTTCCGACGTCGCTCAGTCAGGACTAGCTCTCCTCGCAAGGTCAGTCTCAAGCGTCTCACTTCTCGAGTTGTCGAACTCACTCGTCGAAAGCAACTTAATCAGATTTTTGATGAGGTTGAAATTGCAAAGAGACAATATGGACAGCTGAACACGATTGTGATGAATGCCGTCATTGAGGCTTGTGTTAGTTGCGGTAACATTGATTCAGCTCTTAAGGTTTTTGATGAGATGGCGGGGCCAGATGGTTGTGGAGTGGACAACGTCAGCTACGGTACACTGTTGAAGGGGTTGGGTCAGGCTCACAGAGTGGACCAAGCATTTCAACTTCTTGAATCTGTGGAACAAGGTACTGCGAAAGGAAGTCCAAAATTGTCAGCGCCACTCATCTATGGCTTTCTAAATGCACTAATTGAAGCAGGAGATATGCGCCGTGCCAATGGTCTACTCGCACGATACGGGTATTTGCTTCGAGAGGGGGGTAGTCTTTCAATCTCAGTGTACAACTTATTAATGAAGGGTTACATCACAACAGGATTTCAACAGGCTGCCATGGACCTGTATGATGAAATATTACGTCTAGGAGTGAAGCCTGATAGCCACACTTACAATACTCTAATCGCTGCATGTGTGAAGACAAAGAAGTTGGATACAGCCATCCACTTTTTTGAGGATATGAAGGTTCGAGCAGTCAAATGTGAGCATTACGATCTTTTTCCAGATGTTGTGACTTATACTACTTTACTCAAGGGTTTTGGGAACTCAAAGGACCTCATCACAGTTCAGAAGATTGTGCTGGAAATGAAATCATGTCATGATCTGTTCATTGATCGAACAGCATACACTGCAATAATAGATGCACTGCTGGATTGTGGTTCAATTAAGGGGGCTCTTTCTATCTATGGAGAGTTATTAAAGCTTGCTGGTGGGAACCAAAATTTCTGGCCGAAGCCACATCTCTATCTTTCCCTGATGCGGGCTTTTGCTGTTAGAGGAGATTATGACATGGTACAACACCTGCATAACCGTATGTGGCCAGATTCTACTGGAAATATCTCTCTTCCAGTTCAAGAAGAAGCAGATCACCTTCTGATGGAGGCAGCTCTGAATGATGGTCAGGTTGATGTGGCAATTCAAAATCTTGCATGCATAATCAGGAGATGGAAGGGAATATCATGGACAAGCCGAGGAGGCAGAGCTGCTCTGCAAGTAGAGGCCTTGTTGGGATTCACCAAATCTATGTTCAGTCCTTACCTACTCCCTCAGATAAATTTGAGTGCACCAATTGAAAGTATCATGACTCCATTTGAAGCAACTCAACCGCTAAACGGCACCCTTCTCTTAAATAAAGTAGTAAGGCGTTTCTTCAAGGAAAAAGTAATCCCTGTTGTCGATGACTGGGGCAGCTGTACCGGATTACTCCACCGAGAAGACTGCAGTAAGCTAAATGCCCCAGTTGCCACAATGATGAGAAGCCCCCCTCGAGTTACGAGCTCGACCCCTATAAGCCACGTGGCCGATCTGATTTTGGGGCAGAGATATAAGATGGTGGTTATTTTGAAAGAGAGCAACTATAGTACCAATTACAGCTCAAGTTTGAGGGCAATTGGCGTTTTTACGGCTGAGCAATTGTATGAGCTTATTACCCCACCCAGAGCCAACAGTTTTATGTAA 1821 44.48 MLPPFLRTMFLIHTFLPAHSPQHKYFHFFCIFSSTSSSSSSSSPPLSTASFRRRSVRTSSPRKVSLKRLTSRVVELTRRKQLNQIFDEVEIAKRQYGQLNTIVMNAVIEACVSCGNIDSALKVFDEMAGPDGCGVDNVSYGTLLKGLGQAHRVDQAFQLLESVEQGTAKGSPKLSAPLIYGFLNALIEAGDMRRANGLLARYGYLLREGGSLSISVYNLLMKGYITTGFQQAAMDLYDEILRLGVKPDSHTYNTLIAACVKTKKLDTAIHFFEDMKVRAVKCEHYDLFPDVVTYTTLLKGFGNSKDLITVQKIVLEMKSCHDLFIDRTAYTAIIDALLDCGSIKGALSIYGELLKLAGGNQNFWPKPHLYLSLMRAFAVRGDYDMVQHLHNRMWPDSTGNISLPVQEEADHLLMEAALNDGQVDVAIQNLACIIRRWKGISWTSRGGRAALQVEALLGFTKSMFSPYLLPQINLSAPIESIMTPFEATQPLNGTLLLNKVVRRFFKEKVIPVVDDWGSCTGLLHREDCSKLNAPVATMMRSPPRVTSSTPISHVADLILGQRYKMVVILKESNYSTNYSSSLRAIGVFTAEQLYELITPPRANSFM 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11638789 11642486 - Conep07aG0181700.1 Cone7ag1764 442360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1764 606 ProSiteProfiles CBS domain profile. 538 603 IPR000644 -
Cone7ag1764 606 Pfam PPR repeat family 248 302 IPR002885 -
Cone7ag1764 606 Pfam PPR repeat family 100 147 IPR002885 -
Cone7ag1764 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 213 247 IPR002885 -
Cone7ag1764 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 100 130 IPR002885 -
Cone7ag1764 606 Gene3D Tetratricopeptide repeat domain 64 203 IPR011990 GO:0005515(InterPro)
Cone7ag1764 606 Gene3D Tetratricopeptide repeat domain 204 412 IPR011990 GO:0005515(InterPro)
Cone7ag1764 606 Pfam PPR repeat 329 355 IPR002885 -
Cone7ag1764 606 Pfam PPR repeat 370 393 IPR002885 -
Cone7ag1764 606 Pfam PPR repeat 216 245 IPR002885 -
Cone7ag1764 606 SUPERFAMILY CBS-domain pair 478 574 IPR046342 -
Cone7ag1764 606 PANTHER OS09G0431600 PROTEIN 33 599 IPR044781 -
Cone7ag1764 606 NCBIfam pentatricopeptide repeat 104 127 IPR002885 -
Cone7ag1764 606 NCBIfam pentatricopeptide repeat 250 278 IPR002885 -
Cone7ag1764 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 248 282 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1764 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1857 Cone-Chr4:13323711 Cone7ag1764 Cone-Chr7:11638789 8.32E-93 dispersed
Cone7ag1764 Cone-Chr7:11638789 Cone19ag0653 Cone-Chr19:5569211 1.07E-07 dispersed
Cone7ag1764 Cone-Chr7:11638789 Cone3ag0179 Cone-Chr3:953093 5.50E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g198 . . . . . . . . . . . . Car09g00456 . . . Cpe06g00392 . . . . . . . Cla05g01804 Cam05g1926 Cec05g1938 Cco05g2001 Clacu05g1918 Cmu05g1800 Cre05g1926 Cone4ag1857 Cone7ag1764 . . Lsi04g02196 Csa03g04406 . . . . . . . . . . Sed13g2091 . Cmo09g00518 . . . . . . Bhi09g02372 Tan01g3737 Cmetu04g2143 . Hepe01g2090 Mch11g0628 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013021 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 28