Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1771 ATGATATTTTTGTTTAACTTTCCTTGTTCTGCGACCGACAGGTTCGAAAGAAATATGTCTCGTGTGTATGTTGGAAACTTGGATCCAAGAGTTACTGAGCGAGAACTTGAAGATGAATTTCGTGTATTTGGTGTTATAAGGAGTGTATGGGTTGCAAGAAGACCCCCAGGCTATGCGTTTATTGATTTTGATGACTCTAGAGATGCGAAGGATGCAATCCATGAATTAGATGGGAAGAATGGTTGGAGAGTTGAGCTCTCTCACAACTCTAGGGGTGGTGGTGGGGGGGGTGGGCGTGGAGGAGGCCGTGGCCGTTCTGGTGGTTCTGACTTGAAATGCTATGAGTGTGGTGAGCCTGGACATTTTGCCCGCGAATGTAGGTCTCGTGGTGGTTCTGGAAGAGTTCGTAGCCGTAGTCCCAGATATCGCAGAAGTCCAAGCTATGGTCGCAGGAGTTACAGTCCTCGTGGGCGCTCTCCAGCACGCAGGAGTTTGTCACCTCGTGGACGCAGCTATAGCAGATCGCCACCATACCGTGGCCGTGAGGAGGTGCCTTATGCCAATGGAAATGGCTTAAGGGATCGGCGTCGAAGCAGGAGCTGA 603 50.41 MIFLFNFPCSATDRFERNMSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDSRDAKDAIHELDGKNGWRVELSHNSRGGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRSRGGSGRVRSRSPRYRRSPSYGRRSYSPRGRSPARRSLSPRGRSYSRSPPYRGREEVPYANGNGLRDRRRSRS 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11663010 11665490 + Conep07aG0182400.1 Cone7ag1771 442367

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1771 200 ProSiteProfiles Zinc finger CCHC-type profile. 112 128 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone7ag1771 200 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 19 179 IPR050907 GO:0000398(PANTHER)|GO:0003723(PANTHER)|GO:0016607(PANTHER)
Cone7ag1771 200 FunFam serine/arginine-rich splicing factor RSZ22-like 19 111 - -
Cone7ag1771 200 Pfam RNA recognition motif 22 79 IPR000504 GO:0003723(InterPro)
Cone7ag1771 200 Gene3D - 10 110 IPR012677 -
Cone7ag1771 200 FunFam Serine/arginine-rich splicing factor RSZ22A 109 168 - -
Cone7ag1771 200 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 20 91 IPR000504 GO:0003723(InterPro)
Cone7ag1771 200 SMART c2hcfinal6 112 128 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone7ag1771 200 Gene3D - 111 163 - -
Cone7ag1771 200 MobiDBLite consensus disorder prediction 125 200 - -
Cone7ag1771 200 MobiDBLite consensus disorder prediction 84 107 - -
Cone7ag1771 200 SUPERFAMILY RNA-binding domain, RBD 12 107 IPR035979 GO:0003676(InterPro)
Cone7ag1771 200 SUPERFAMILY Retrovirus zinc finger-like domains 105 130 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone7ag1771 200 CDD RRM_SRSF3_like 21 89 - -
Cone7ag1771 200 Pfam Zinc knuckle 112 127 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone7ag1771 200 SMART rrm1_1 21 87 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1771 K12896 - - rcu:8265204 236.498
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1031 Cone-Chr13:8583095 Cone7ag1771 Cone-Chr7:11663010 4.24E-60 dispersed
Cone4ag1821 Cone-Chr4:13170351 Cone7ag1771 Cone-Chr7:11663010 1.00E-09 transposed
Cone17ag1084 Cone-Chr17:8081109 Cone7ag1771 Cone-Chr7:11663010 2.11E-58 wgd
Cone4ag1864 Cone-Chr4:13363054 Cone7ag1771 Cone-Chr7:11663010 5.16E-111 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g661 . . . . . Bpe02g00223 . . . . Cma01g01578 . . . . . . . . . . . . . . . . . . . . Cone4ag1864 Cone7ag1771 . . . Csa03g04411 Chy04g00289 . . . . . . . . . . . . Cma09g00533 . . . . . . . . . . . . . . . . . . . . . . Cme04g00330
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001098 3 1 1 2 2 1 5 2 2 2 1 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 2 7 5 2 76