Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1787 ATGTTCAGTATGTCAACACAAAGCTCCTGCCTTGGAAAACCTCCAAGACAGTTCTCGTACAGTGACATAGAGGAAGGTACAAATGGGTTCTTAGACATTAATTTCGTTGCAGAAGGTGGTTTTGGCATTGTTCACAGAGGGATGTTAAGAGACGGTCAGGTGGTAGTAGTGAAGCAATTGAAATGTGGAGGCTTTCAAGCAGATACATATTTTTGCAGAGAAGTGAGAGTGTTAAGTTGTGCACAACATAGAAATGTCGTGTTGCTGACGGGGTTTTGCATTCAGGGTAGGATGAGGCTATTAGTTTATGAGTTTATATGCAACAGCTCCTTGGACTTCCATTTGCATGGAAACAAGACCCATTTAGGTTGGCACTCTCGTGTGAAGATAGCAATAGGGGTAGCTCGCGGATTACGATATCTTCATGAAGATTGTAGAGTCGGTTGCATAGTTCATGGAGACCTTCGGCCTAATAATATACTCCTAACCCACAATTTTGAACCTTTGGTTGCTGATTTCGGGCTAGCTCGGTGGCATTCTGAGTGGTATGCTAGCATTGAGGACAGACTGATCGGAAGTACAGGGTATCTTGCACCAGAGTACATCAACAGCGGTATTGTATCACATAAAATAGACGTGTATGCATTTGGGATGATTTTATTAGAGCTCATAACTGGTAAAAGAGTAACCGAGCTGCATTACCCGGGGGGAACGAAGTTTATGTCCCAGTGGTTCCACCCGCTCTCTCCATTAGAAATAATAGATCAGTTACCAGCTAATACATTACTAGACCCCTGCTTGGCCTCAGAGCAATCACCAGATTTTCCCCATCAATTGCAGGTAATGGGCCGAGCTGCTTCCTTGTGTCCAAGTCTAGATCCCGAATCAAGACCACCAATGTCTAAGGTGTTAAGTGTGCTAGAGGGAGGAGACCCAGCTGGTTTAGACTTCAACTCAGCCGGCTGTAGAAGTGGCCATTTGCGTGGTCTAAACTCTCAAACAAGAATTGAGTCCAGAAGAAGAAGCCATTCTCGGAAGCTCTCACACTGA 1050 44.67 MFSMSTQSSCLGKPPRQFSYSDIEEGTNGFLDINFVAEGGFGIVHRGMLRDGQVVVVKQLKCGGFQADTYFCREVRVLSCAQHRNVVLLTGFCIQGRMRLLVYEFICNSSLDFHLHGNKTHLGWHSRVKIAIGVARGLRYLHEDCRVGCIVHGDLRPNNILLTHNFEPLVADFGLARWHSEWYASIEDRLIGSTGYLAPEYINSGIVSHKIDVYAFGMILLELITGKRVTELHYPGGTKFMSQWFHPLSPLEIIDQLPANTLLDPCLASEQSPDFPHQLQVMGRAASLCPSLDPESRPPMSKVLSVLEGGDPAGLDFNSAGCRSGHLRGLNSQTRIESRRRSHSRKLSH 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11729437 11730823 + Conep07aG0184000.1 Cone7ag1787 442383

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1787 349 ProSiteProfiles Protein kinase domain profile. 30 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag1787 349 Gene3D Phosphorylase Kinase; domain 1 2 105 - -
Cone7ag1787 349 PANTHER OS01G0750732 PROTEIN 14 335 IPR050885 -
Cone7ag1787 349 SUPERFAMILY Protein kinase-like (PK-like) 11 307 IPR011009 -
Cone7ag1787 349 MobiDBLite consensus disorder prediction 326 349 - -
Cone7ag1787 349 ProSitePatterns Tyrosine protein kinases specific active-site signature. 150 162 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone7ag1787 349 FunFam Os07g0541700 protein 106 192 - -
Cone7ag1787 349 Gene3D Transferase(Phosphotransferase) domain 1 107 313 - -
Cone7ag1787 349 Pfam Protein tyrosine and serine/threonine kinase 36 305 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone7ag1787 349 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 3 105 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1787 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag0733 Cone-Chr7:4436877 Cone7ag1787 Cone-Chr7:11729437 1.94E-96 dispersed
Cone7ag1209 Cone-Chr7:8992308 Cone7ag1787 Cone-Chr7:11729437 1.62E-113 dispersed
Cone7ag1489 Cone-Chr7:10436979 Cone7ag1787 Cone-Chr7:11729437 1.87E-77 dispersed
Cone7ag1787 Cone-Chr7:11729437 Cone2ag0408 Cone-Chr2:2164959 5.06E-72 dispersed
Cone7ag1787 Cone-Chr7:11729437 Cone4ag1878 Cone-Chr4:13429540 1.80E-229 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g859 . Blo12g00921 . Bda03g00242 . Bpe04g00201 Bma04g00192 . . . . Cma09g00181 . . . Cpe06g00130 . . . . . . . . . . . . . . . Cone4ag1878 Cone7ag1787 . . Lsi04g01631 Csa03g04172 Chy04g00545 . . . . . . Bpe05g00345 . . . . Cmo09g00177 . . . Car09g00161 . . . . . . . . . Cla05g01971 . . . . . . . . . Cme04g00634
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006501 2 5 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83074 PF13943 WPP 2.60E-37 No_clan Cone PK