Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1795 ATGGCGGCACTGCTAGAGACGCCGCTTCTAAACAACCAAAGTACTCTAAGCAATGGAAGCGATGATCAACATGCGCAAGTAGGCTTCGTCAAGAAGTTCGGAGAAGAGTCCAGGCGGCTATGGAAGATAGCGGGCCCTGCAATCTTCACGGCCATATGTCAGTATTCATTGGGTGCTCTCACTCAGACCTTTGCCGGTCAGGTCGGAGAAATAGAGCTCGCTGCTGTCTCTGTCGAGAACTCGGTCATTGCAGGTCTCGCCTTTGGTGTCATGTTGGGGATGGGGAGTGCATTGGAGACGTTATGTGGGCAGGCATTCGGTGCGGGCAACATCAGGATGTTAGGGGTGTACATGCAGAGATCATGGGTGATCTTAGTGACTACTGCTTGCCTTTTGGTTCCTATTTATGTCTGGTCTCCTCCAATTCTGGAGGTTATTGGGGAGACAACTGAGATCTCTGAGGCGGCAGGGAAATTTGCTCTGTGGATGCTTCCGCAGTTATTTGCATACGCCCTCAATTTCCCGATCCAGAAGTTCTTACAAGCACAGAGGAAAGTGCTTGTCATGGCCTGGGTTTCTGCAATTGTGCTAGTACTCCATGCATTTTTCAGCTGGTTACTGATATTGAAGCTCGGCTGGGGCTTGGTCGGAGCCGCTATTACTCTCAACACGTCGTGGTGGCTCATTGTGATTGGTCAGTTGCTCTATATATTCATCACGACGTCGGACGGTGCTTGGAGTGGATTCTCATGGCTCGCTTTTGCTGATCTTTGGGGATTTGTTAAACTCTCTTTGGCCTCTGCTGTCATGTTATGCTTGGAGTTTTGGTACTTGATGATATTGGTCGTGATTACTGGCCGTTTGACTGATCCACTTATCCCGGTAGATGCTATTTCTATCTGCATGAACATCCAAGGGTGGGACGCCATGATTGCACTAGGATTCAATGCTGCAATAAGTGTGAGAGTATCAAACGAACTGGGAGCCGGTAATTCTCGGCTAGCTAAATTTGCAGTAATTGTTGTTTCTATAACTTCTGTTTCCATTGGAGTCGTCTGTATGGCGGTAGTACTTTCCACACGGGATTTTTTCCCTTACCTCTTCACCAGCAGTGATGCCGTCGCTGAAGAGACTACTAAACTCGCCACCTTGTTGGGGATCACCGTGCTTCTTAACAGCCTTCAACCCGTCTTATCTGGTGTGGCTGTTGGGGCGGGATGGCAATCTCTGGTCGCGTATATCAACATTGGTTGTTACTATATTGTTGGATTGCCAGCCGGCATACTACTCGGATTTACATTCGATTTTGGAGTTGAGGGAATTTGGTCAGGGATGATTGGAGGCATTTGTTTGCAGACAATTATCTTGATAGTGGTTACTTCCCTAACAAACTGGAAAAGAGAAGCTGAAGAAGCCGGGAGCCGTGTGAAGAGATGGGGAGGAGGATCAACCGATTAA 1458 48.22 MAALLETPLLNNQSTLSNGSDDQHAQVGFVKKFGEESRRLWKIAGPAIFTAICQYSLGALTQTFAGQVGEIELAAVSVENSVIAGLAFGVMLGMGSALETLCGQAFGAGNIRMLGVYMQRSWVILVTTACLLVPIYVWSPPILEVIGETTEISEAAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWVSAIVLVLHAFFSWLLILKLGWGLVGAAITLNTSWWLIVIGQLLYIFITTSDGAWSGFSWLAFADLWGFVKLSLASAVMLCLEFWYLMILVVITGRLTDPLIPVDAISICMNIQGWDAMIALGFNAAISVRVSNELGAGNSRLAKFAVIVVSITSVSIGVVCMAVVLSTRDFFPYLFTSSDAVAEETTKLATLLGITVLLNSLQPVLSGVAVGAGWQSLVAYINIGCYYIVGLPAGILLGFTFDFGVEGIWSGMIGGICLQTIILIVVTSLTNWKREAEEAGSRVKRWGGGSTD 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11763816 11766337 - Conep07aG0184900.1 Cone7ag1795 442391

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1795 485 Pfam MatE 267 427 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cone7ag1795 485 Pfam MatE 46 206 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cone7ag1795 485 NCBIfam MATE family efflux transporter 46 442 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cone7ag1795 485 CDD MATE_eukaryotic 36 471 IPR045069 GO:0042910(InterPro)|GO:1990961(InterPro)
Cone7ag1795 485 PANTHER MULTIDRUG RESISTANCE PROTEIN 30 470 - GO:0016020(PANTHER)|GO:0022857(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1795 K03327 - - rcu:8260928 816.994
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1072 Cone-Chr13:8748092 Cone7ag1795 Cone-Chr7:11763816 3.83E-194 dispersed
Cone15ag0067 Cone-Chr15:380025 Cone7ag1795 Cone-Chr7:11763816 5.63E-178 dispersed
Cone19ag1059 Cone-Chr19:7792757 Cone7ag1795 Cone-Chr7:11763816 4.68E-197 dispersed
Cone1ag1178 Cone-Chr1:55800791 Cone7ag1795 Cone-Chr7:11763816 3.96E-100 dispersed
Cone4ag1315 Cone-Chr4:10806673 Cone7ag1795 Cone-Chr7:11763816 6.82E-162 dispersed
Cone5ag0883 Cone-Chr5:3784618 Cone7ag1795 Cone-Chr7:11763816 4.62E-165 dispersed
Cone6ag1543 Cone-Chr6:12118169 Cone7ag1795 Cone-Chr7:11763816 2.01E-154 dispersed
Cone7ag1795 Cone-Chr7:11763816 Cone8ag0208 Cone-Chr8:1120557 1.97E-157 dispersed
Cone17ag1315 Cone-Chr17:9323225 Cone7ag1795 Cone-Chr7:11763816 4.44E-299 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g873 Blo01g01550 . Bda01g00549 . Bpe02g00407 . . Bma01g02300 . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1795 Cone17ag1315 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001944 2 1 2 3 1 1 1 1 1 2 1 1 3 1 1 3 1 5 1 1 1 3 2 6 4 1 2 4 7 1 64