Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1797 ATGGGTTGGATTAGCAAAATATTTAAAGTCGGTTCTAGCCATAAAGTTTCAAAAGGGCACCACAATGATAGTTATGGTGATAATCCAAATTACCACGGGCCTTCTTCTTCACGGGATTTGAGGACCGAAAATGAAAACGAAGATATAGACCGTGCCATCGCTCTGTCTCTTGTAGAAGAAAATCAAAAACATCAAAATGTGATTGCAACTCAGGATTTTCAATTGGAAGAAGATGAACAACTTGCTAGAGCCATCCAAGAAAGTCTAAATGCCGAGCCTTCTCCTTCCCCTACTCCTATTCCTCGGCATACAAATGGAAATATGCATCGACCTTTTCCAGTCCACTTTCCTACAGGGCCCAGAATATGTGCTGGCTGCCATGTTGACATTGGTTATGGACAGTATCTCAACTGCTTAAATTCATTTTGGCATCCAGAATGCTTCCGTTGTCGGGCTTGCAACCTACCGATTTTTGACTTGGAGTTTTCTACATCTGGGAATTACCCTTATCATAAATCTTGCTACCGAGAAAACAACCATCCGAAATGTGATGTGTGCAAGAATTTTATTCCAACAAATCACTCAGGGCTTATTGAATATAGGGCACATCCCTTTTGGATCCAGATATACTGCCCACCTCATGAACGAGATGGAACTGCTCGTTGCTGCAGTTGTGAACGACTCGAGCCAAAAGATACAAAATATATTGCTCTTAATGATGGTAGAAATCTATGCCTTGAATGTCTGGACTCTGCAATCATGGACACGAGTGAGTGTCAACCGCTTTATCTTGAGATTCTAGAGTTTTATAACAGTTTGAATATGAGATTGGAGCAGCAAGTTCCATTACTTTTGGTTGAAAGACAAGCATTGAACGAAGCTAGAGAAGGAGAAAAGAATGGCCATCGCCATATGCCTGAAACAAGAGGTCTCTGCCTATCTGAGGAGCAAACCATACGTTCTATTTTAAGGCGGCCCCGATTTGGTCTAGGAAACAGAGCAACGGAAATGATATCAGAGCCCTATAAACTAACACGACGCTGTGAGGTCACAGCGATTCTTGTCCTTTATGGTCTTCCAAGGTTGCTTACCGGCTCAATCCTAGCTCATGAGATGATGCATGCATGGCTTCGCCTTAAAGGTATAAAAGCTCTAAGTCAAGACGTGGAAGAAGGTATATGTCAGGTCCTTGCACACATGTGGTTGAATTCTGAGCTCATAATTTCCGGGCCCGAAAGGAGCAGCATGGCATCTACCTCATCTAATTCAGCTTCTTCTACTTTGAGAAAAAGTACAAGATCTCAATTCGACAGTAAACTTGGAGAGTTCTTTCGGCACCAGATTGAAGCCGATACGTCTCTGGTTTACGGAGATGGCTTTCGAGCTGGTCAAAATGCGGTGCGTAAATACGGTCTCCAAAGGACCCTCGATCACATTACAATGACCGGGACTTTTCCATGTTGA 1464 42.96 MGWISKIFKVGSSHKVSKGHHNDSYGDNPNYHGPSSSRDLRTENENEDIDRAIALSLVEENQKHQNVIATQDFQLEEDEQLARAIQESLNAEPSPSPTPIPRHTNGNMHRPFPVHFPTGPRICAGCHVDIGYGQYLNCLNSFWHPECFRCRACNLPIFDLEFSTSGNYPYHKSCYRENNHPKCDVCKNFIPTNHSGLIEYRAHPFWIQIYCPPHERDGTARCCSCERLEPKDTKYIALNDGRNLCLECLDSAIMDTSECQPLYLEILEFYNSLNMRLEQQVPLLLVERQALNEAREGEKNGHRHMPETRGLCLSEEQTIRSILRRPRFGLGNRATEMISEPYKLTRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGIKALSQDVEEGICQVLAHMWLNSELIISGPERSSMASTSSNSASSTLRKSTRSQFDSKLGEFFRHQIEADTSLVYGDGFRAGQNAVRKYGLQRTLDHITMTGTFPC 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11772289 11775657 + Conep07aG0185100.1 Cone7ag1797 442393

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1797 487 Gene3D Cysteine Rich Protein 115 181 - -
Cone7ag1797 487 PANTHER PROTEIN DA1-RELATED 2 1 487 IPR045218 GO:0043130(PANTHER)
Cone7ag1797 487 ProSiteProfiles LIM domain profile. 121 181 IPR001781 -
Cone7ag1797 487 MobiDBLite consensus disorder prediction 88 110 - -
Cone7ag1797 487 Pfam LIM domain 123 177 IPR001781 -
Cone7ag1797 487 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 76 95 IPR003903 -
Cone7ag1797 487 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 44 63 IPR003903 -
Cone7ag1797 487 MobiDBLite consensus disorder prediction 12 47 - -
Cone7ag1797 487 CDD LIM_DA1 123 175 - -
Cone7ag1797 487 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 115 148 - -
Cone7ag1797 487 ProSitePatterns LIM zinc-binding domain signature. 123 157 IPR001781 -
Cone7ag1797 487 SMART uim 76 95 IPR003903 -
Cone7ag1797 487 SMART uim 44 63 IPR003903 -
Cone7ag1797 487 Pfam Protein DA1 273 482 IPR022087 -
Cone7ag1797 487 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 149 204 - -
Cone7ag1797 487 SMART lim_4 122 174 IPR001781 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1797 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0235 Cone-Chr5:997113 Cone7ag1797 Cone-Chr7:11772289 5.78E-189 dispersed
Cone7ag1797 Cone-Chr7:11772289 Cone8ag0087 Cone-Chr8:451779 2.90E-156 dispersed
Cone17ag1316 Cone-Chr17:9329308 Cone7ag1797 Cone-Chr7:11772289 1.16E-238 wgd
Cone20ag0158 Cone-Chr20:690007 Cone7ag1797 Cone-Chr7:11772289 2.17E-257 wgd
Cone4ag1886 Cone-Chr4:13470594 Cone7ag1797 Cone-Chr7:11772289 3.16e-315 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g879 . . . . . . . . Cmo05g00224 Cmo12g00443 . . . Car12g00468 . . Cpe07g00446 Bhi04g00285 . . . . . . Cla08g01521 Cam08g2012 Cec08g1588 Cco08g1723 Clacu08g1701 . Cre08g1483 Cone4ag1886 Cone7ag1797 Cone17ag1316 Cone20ag0158 . . . Cme03g01987 Blo17g00819 . Bda08g01302 . . Bpe05g00075 . Bma05g00105 . . . Cma12g00498 Cma05g00218 Car05g00178 . Cpe11g00180 . . . . . . . . . . . . . . . Lsi08g01424 Csa02g02018 Chy03g01493 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001147 2 4 2 2 2 2 2 2 2 2 2 2 4 2 2 3 2 6 3 2 2 2 2 2 2 3 2 9 2 3 79
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46593 PF00179 UQ_con 9.50E-16 CL0208 Cone TR