Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone7ag1799 | ATGGCAAGTGGGTTAGGGGAATCAACAAGCAAGCCACCCCAAAGCCCGTCTTGCTCTACTAACACTGAAGCCGGTAATTTCGAGTGCAACATTTGCTTCGACTTAGCTCAAGATCCAATTGTAACATTGTGTGGCCATCTCTTCTGTTGGCCTTGCCTTTACAAATGGCTCCATATTCACTCCCATTCTCAAGAATGCCCTGTTTGCAAAGCTGTTGTAGAAGAAGAGAAATTGGTCCCCTTATATGGTAGAGGAAAGACATCAACTGACCCTAGATCAAAATCAATTCCGGGAATTAATATCCCAAATCGTCCGGCAGGTCAGAGACCTGAAACGGCTCCTCAACCAGAACCAAACCATTTTCCTCCAAATGGATTTGGATTCATGGGAGGGTTCGGAGGGGGGTTTGCTCCATTGACAACTACTAGATTCGGGAATTTTACATTTTCTGCAGCTTTCGGTGGTCTGATTCCGTCCTTATTTAACCTTCATTTGCACGGGTATCCTTATCCAACCATGTATGGTGCCTCTCCTACTTTTCCTTATGAGTTTTCTAATCCTTCTCACGGTGGCGGCCATTACGGAGAGAGACACTATAACCAGCATAACTCGGGTCAAGGACAGCAAGATTATTACCTGAAGAGGCTGCTATTGTTTATTGGTTTTTGCGTTCTTCTTGCTCTGATCTGGCAATAG | 696 | 44.97 | MASGLGESTSKPPQSPSCSTNTEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHIHSHSQECPVCKAVVEEEKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPETAPQPEPNHFPPNGFGFMGGFGGGFAPLTTTRFGNFTFSAAFGGLIPSLFNLHLHGYPYPTMYGASPTFPYEFSNPSHGGGHYGERHYNQHNSGQGQQDYYLKRLLLFIGFCVLLALIWQ | 231 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 11780316 | 11781968 | - | Conep07aG0185300.1 | Cone7ag1799 | 442395 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone7ag1799 | 231 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 11 | 83 | IPR013083 | - | |
Cone7ag1799 | 231 | ProSitePatterns | Zinc finger RING-type signature. | 44 | 53 | IPR017907 | - | |
Cone7ag1799 | 231 | Pfam | Zinc finger, C3HC4 type (RING finger) | 29 | 69 | IPR018957 | GO:0046872(InterPro) | |
Cone7ag1799 | 231 | SMART | ring_2 | 29 | 69 | IPR001841 | - | |
Cone7ag1799 | 231 | MobiDBLite | consensus disorder prediction | 83 | 117 | - | - | |
Cone7ag1799 | 231 | CDD | RING-HC_AtRMA-like | 27 | 71 | - | - | |
Cone7ag1799 | 231 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 14 | 222 | IPR045103 | GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:0071712(PANTHER) | |
Cone7ag1799 | 231 | SUPERFAMILY | RING/U-box | 26 | 82 | - | - | |
Cone7ag1799 | 231 | ProSiteProfiles | Zinc finger RING-type profile. | 29 | 70 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone1ag0158 | Cone-Chr1:883512 | Cone7ag1799 | Cone-Chr7:11780316 | 7.98E-28 | dispersed | |
Cone3ag0094 | Cone-Chr3:541002 | Cone7ag1799 | Cone-Chr7:11780316 | 3.53E-24 | dispersed | |
Cone5ag1713 | Cone-Chr5:12194510 | Cone7ag1799 | Cone-Chr7:11780316 | 1.12E-27 | dispersed | |
Cone7ag1799 | Cone-Chr7:11780316 | Cone8ag0084 | Cone-Chr8:438507 | 3.94E-94 | dispersed | |
Cone17ag1319 | Cone-Chr17:9339349 | Cone7ag1799 | Cone-Chr7:11780316 | 1.23E-79 | wgd | |
Cone20ag0156 | Cone-Chr20:683521 | Cone7ag1799 | Cone-Chr7:11780316 | 4.85E-70 | wgd | |
Cone4ag1888 | Cone-Chr4:13476940 | Cone7ag1799 | Cone-Chr7:11780316 | 1.92E-161 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone7ag1799 | K10666 | - | rcu:8260936 | 343.584 |