Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1799 ATGGCAAGTGGGTTAGGGGAATCAACAAGCAAGCCACCCCAAAGCCCGTCTTGCTCTACTAACACTGAAGCCGGTAATTTCGAGTGCAACATTTGCTTCGACTTAGCTCAAGATCCAATTGTAACATTGTGTGGCCATCTCTTCTGTTGGCCTTGCCTTTACAAATGGCTCCATATTCACTCCCATTCTCAAGAATGCCCTGTTTGCAAAGCTGTTGTAGAAGAAGAGAAATTGGTCCCCTTATATGGTAGAGGAAAGACATCAACTGACCCTAGATCAAAATCAATTCCGGGAATTAATATCCCAAATCGTCCGGCAGGTCAGAGACCTGAAACGGCTCCTCAACCAGAACCAAACCATTTTCCTCCAAATGGATTTGGATTCATGGGAGGGTTCGGAGGGGGGTTTGCTCCATTGACAACTACTAGATTCGGGAATTTTACATTTTCTGCAGCTTTCGGTGGTCTGATTCCGTCCTTATTTAACCTTCATTTGCACGGGTATCCTTATCCAACCATGTATGGTGCCTCTCCTACTTTTCCTTATGAGTTTTCTAATCCTTCTCACGGTGGCGGCCATTACGGAGAGAGACACTATAACCAGCATAACTCGGGTCAAGGACAGCAAGATTATTACCTGAAGAGGCTGCTATTGTTTATTGGTTTTTGCGTTCTTCTTGCTCTGATCTGGCAATAG 696 44.97 MASGLGESTSKPPQSPSCSTNTEAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHIHSHSQECPVCKAVVEEEKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPETAPQPEPNHFPPNGFGFMGGFGGGFAPLTTTRFGNFTFSAAFGGLIPSLFNLHLHGYPYPTMYGASPTFPYEFSNPSHGGGHYGERHYNQHNSGQGQQDYYLKRLLLFIGFCVLLALIWQ 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11780316 11781968 - Conep07aG0185300.1 Cone7ag1799 442395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1799 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 83 IPR013083 -
Cone7ag1799 231 ProSitePatterns Zinc finger RING-type signature. 44 53 IPR017907 -
Cone7ag1799 231 Pfam Zinc finger, C3HC4 type (RING finger) 29 69 IPR018957 GO:0046872(InterPro)
Cone7ag1799 231 SMART ring_2 29 69 IPR001841 -
Cone7ag1799 231 MobiDBLite consensus disorder prediction 83 117 - -
Cone7ag1799 231 CDD RING-HC_AtRMA-like 27 71 - -
Cone7ag1799 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 14 222 IPR045103 GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:0071712(PANTHER)
Cone7ag1799 231 SUPERFAMILY RING/U-box 26 82 - -
Cone7ag1799 231 ProSiteProfiles Zinc finger RING-type profile. 29 70 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0158 Cone-Chr1:883512 Cone7ag1799 Cone-Chr7:11780316 7.98E-28 dispersed
Cone3ag0094 Cone-Chr3:541002 Cone7ag1799 Cone-Chr7:11780316 3.53E-24 dispersed
Cone5ag1713 Cone-Chr5:12194510 Cone7ag1799 Cone-Chr7:11780316 1.12E-27 dispersed
Cone7ag1799 Cone-Chr7:11780316 Cone8ag0084 Cone-Chr8:438507 3.94E-94 dispersed
Cone17ag1319 Cone-Chr17:9339349 Cone7ag1799 Cone-Chr7:11780316 1.23E-79 wgd
Cone20ag0156 Cone-Chr20:683521 Cone7ag1799 Cone-Chr7:11780316 4.85E-70 wgd
Cone4ag1888 Cone-Chr4:13476940 Cone7ag1799 Cone-Chr7:11780316 1.92E-161 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1799 K10666 - rcu:8260936 343.584