Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1811 ATGATGGAGGAGGAAGAAAGTTCTTCACCAGTACCGGTTTCTCCAGCTAGTAGAGAGGCCGAACAAGTTTCTTCTCCAGGTTGTAAAATCGAGCAGGGTGAATTAGCTCTACCGAAGAAGAAGCGAAACCTCCCTGGAATGCCAGATCCGGAGGCGGAGGTGATCGCTTTGTCCCCTACAACCTTGCTGGCGACAAACCGTTTCGTGTGTGAGATCTGCAACAAAGGTTTCCAGCGAGACCAGAACTTACAGCTCCACCGCCGTGGCCATAACCTTCCGTGGAAGCTCCGGCAACGAACAAGCACGGAGGTGAGAAAACGGGTCTACGTTTGCCCGGAGTCTTCCTGCGTACACCACAACCCAACGAGAGCTCTAGGCGACCTCACCGGCATAAAGAAGCATTTCTCCAGAAAGCACGGCGAGAAGAAGTGGAAGTGCGAGCGGTGCTCCAAGAAATACGCCGTATTGTCAGATTGGAAGGCGCACATGAAAACCTGCGGAACCAGAGAGTATAAATGCGACTGTGGAACTTTGTTTTCAAGGAGGGATAGCTTTATTACACACACAGCTTTCTGCCATGCCTTATCTGAGGCTGCTCCGGCCAAAACACAAGCACAGACAATTAATACCAGGTCAGAGGAGAATGATTCGACTATGAACGTAATAGCTGTAGTAGCATCCCCACCTCCGCCACCTCTTACCCCGTCGACGTCTGTGGTGTCGCCAGCTTTGTCCATTCAGAGCTCAGAGTTGCCGGAGATTGCGGTTGGAGTTTCTTCACCAAGACCAACAGCGACAACATGCTTACCAACTGCCGCTATCACCACCAGCTCAGTCGCAGCCAGCAATACTACAAGTACTAGTGGCAGCAGCAATAGCACTGTATTGGCTAGTGTATTCGCCCCTTCTTCCACCACATCAAATATCCCACAGCCAATCCAAACCATATCAGAACCATCTCCTTCATTCTCCACCCTCATCTCCTCCTTAACCCGCGCAGATATTCACCCAACAGGTACTCTTCCCAACGTACCCACCGTAGAACCCACTTCACTTTCTCTCTCCACTTCCCTCTATCTCTCCAGCCAAAGCCCATCCTTCTACGCCCCGCCTGATTTAGACCACCGCCGTTATGCCACCGCTGCCGCCCAGTGTCTGCAGCCTCCGACCATGTCCGCGACAGCGCTGCTACAGAAGGCAGCGCAGATGGGTGCTGCTACGTCGAATGCGTCGTCGCTTCGTGGGTTTGGCCTTACTTTGTCGTCTTCGTACGGTCAAGATAATTGCAGTACTAGTAATGGTGGTGGTCAGTGGGATAGCGGCGGCGCCAGTACAGGTAACTCGTTGGCTGTTGGGCTTGGGCTCGGGCTTCGGTCTGGGTCTGGGTCTGGGTCTGGTCTGTCTGATCTAATGATGAGCCCATCCTCCACTTTTGGGAGTCAGCTGATGACGCGCGATCTTCTTGGGCTGGGAATGGCGGGTAGTGGACCAGGCGGTCCAGTAGTTTCTCGTCCACGTGGACTTTTAGCTTTACTTACCCCCCTTGACGGTAGCTTCAGTGTTACGGCACCTACTCCGTATAGAGGAGAAGACGACGGTGGCGGGAGTCGGTCCAGAGACACCTGGGATGGCGGTCCACCACCAGATAGAAAGCCCTGTGGGCCATTTTTTCAATAA 1677 53.31 MMEEEESSSPVPVSPASREAEQVSSPGCKIEQGELALPKKKRNLPGMPDPEAEVIALSPTTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSTEVRKRVYVCPESSCVHHNPTRALGDLTGIKKHFSRKHGEKKWKCERCSKKYAVLSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHTAFCHALSEAAPAKTQAQTINTRSEENDSTMNVIAVVASPPPPPLTPSTSVVSPALSIQSSELPEIAVGVSSPRPTATTCLPTAAITTSSVAASNTTSTSGSSNSTVLASVFAPSSTTSNIPQPIQTISEPSPSFSTLISSLTRADIHPTGTLPNVPTVEPTSLSLSTSLYLSSQSPSFYAPPDLDHRRYATAAAQCLQPPTMSATALLQKAAQMGAATSNASSLRGFGLTLSSSYGQDNCSTSNGGGQWDSGGASTGNSLAVGLGLGLRSGSGSGSGLSDLMMSPSSTFGSQLMTRDLLGLGMAGSGPGGPVVSRPRGLLALLTPLDGSFSVTAPTPYRGEDDGGGSRSRDTWDGGPPPDRKPCGPFFQ 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11826012 11829316 - Conep07aG0186500.1 Cone7ag1811 442407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1811 558 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 17 493 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone7ag1811 558 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 170 207 - -
Cone7ag1811 558 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
Cone7ag1811 558 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Cone7ag1811 558 MobiDBLite consensus disorder prediction 519 558 - -
Cone7ag1811 558 Gene3D Classic Zinc Finger 106 193 - -
Cone7ag1811 558 Gene3D Classic Zinc Finger 68 105 - -
Cone7ag1811 558 MobiDBLite consensus disorder prediction 1 44 - -
Cone7ag1811 558 SUPERFAMILY beta-beta-alpha zinc fingers 67 165 IPR036236 -
Cone7ag1811 558 MobiDBLite consensus disorder prediction 532 546 - -
Cone7ag1811 558 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 105 139 - -
Cone7ag1811 558 FunFam protein indeterminate-domain 5, chloroplastic-like 122 201 - -
Cone7ag1811 558 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 143 167 - -
Cone7ag1811 558 SMART c2h2final6 144 164 IPR013087 -
Cone7ag1811 558 SMART c2h2final6 109 139 IPR013087 -
Cone7ag1811 558 SMART c2h2final6 171 193 IPR013087 -
Cone7ag1811 558 SMART c2h2final6 68 90 IPR013087 -
Cone7ag1811 558 FunFam protein indeterminate-domain 12-like 47 115 - -
Cone7ag1811 558 Pfam Zinc-finger of C2H2 type 68 90 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag1811 Cone-Chr7:11826012 Cone9ag0477 Cone-Chr9:2278423 1.36E-18 dispersed
Cone4ag1898 Cone-Chr4:13515979 Cone7ag1811 Cone-Chr7:11826012 2.54E-301 wgd
Cone6ag1610 Cone-Chr6:12459846 Cone7ag1811 Cone-Chr7:11826012 5.11E-119 wgd
Cone7ag1811 Cone-Chr7:11826012 Cone9ag1538 Cone-Chr9:11184713 8.04E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46595 PF00010 HLH 1.30E-06 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1811 K25869 - mdm:103440426 506.138