Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1828 ATGAATTTAAAGCGGTTAATCTGTAAGCAAGCAATCAGGAATTTTTCAACGATCGATCGTAGGTTTCTATCTCACCGTCGCTATATTTTTGGAATTGGTACGAACATCACCACTTCTACTCCAATATCTTCTTCATTTCATTCAGCAAATGAATCCGATGCTTCGATCTCACTGCAAAACCCTAAACCCCCAGAACCGAACTCCACATTCTATAGGCGCATTCATTACACTCGAGAGACTAAGCTGGGTTTTTCAGCTAACGAAGCCAAACTCGAATCTGAGGTTTCCGAGGAAGATGACGGAACCATGAATGAGTTTTTGTCTCGATTTGTCTTTATAATGCGTGGGAAGCTCGCTGAAGCTTACTCAGATGGTGATAAGCAGACAATTGATAAGATGCTGTTAATCATCGTTGACAAGGTTGTTTCGGAAATGGAAAAAGCCGGTCTTGAGCAGATGCGAGATGCAGCGATGGCCACTCCCTCACATGATCTTAGTGTGGATTTGTGGACGACAGTGTGGGAGGTTAGCAATATGGTGTTGGAGGATATGAGAAAGGCTGCGAAGAAGGAAAAAATGAAAGGTTTTTTACTATGTGAAGAAGTTCAGGAAATGTGCAGGTTTGCTGGAGAAGTTGGTATTCGAGGAGACATGCTTAGAGAGTTCAGATTCAAATGGGCTCGCGAAAAAATGGAGGAAAGTGAGTTTTATGAAGGTTTGAAGCGGCTTAAAGAAGAGGCGCAGGCCCAAGAAGAGGGAGCGGAAGACAAACAAAGTAAAACGGTGCGGGAAGAGGAGGTTGAGGTCTATAATGAGGAGAAAGCTAAGGATTTTTCTCTTCCCAAGAGACACGGGAAGATAAAATACAAGATTTATGGATTGGATTTATCTGATCCGAAGTGGGGGGACGTTGCTGATAAAGTCCATGAGACAGAGGAGATGCTTTGGCCTCAGGAACCAAAGCCAATTTCGGGGAAATGCGAACTTGTTACCAAACAAATTCTTTCATTAAAGGAAGGGGATGACCCGGCTCCATTAGTGGTTGAATGGATAGAGCTTCTTCAACCTAGCAGAGTGGACTGGATGGCCTTGCTTGATAGATTGAAGGAGCAGAACACTCAATTATACTATAAGGTAGCAGAACTTTTGTTGAGCGAAGAGTCTTTCCAGACCAACATCCGTGATTACTCAAAGCTTATTGATGCTCATGCAAAAGAGAACCACATAGAGGATGCTGAGAGAGTACTTAAGAAGATGTCTGAGAAGGGTATTCAACCAGATATCTTAACAGGCTCAGTTTTGGTTCATATGTATAGCAAGGTGGGTAATATTGATCGTGCAAAGGAAGCTTTTGAGAGGCTGAGGAGCCAGGGTTTTCAACCAGATGAAAAGATTTTCAACTCAATGATAATGGCATATGTAAATGCAGGTCAGCCCAAGTTGGGTGTGTCTCTGATTAGAGAAATGGAAGCAAGGGACATTAAAACAACAAAGGAGATTTATATGGCATTACTCAGGTCATTTTCACAGCATGGTGATATTAGTGGGGCTGGACAAATTGCCACCAATATGCAGTTTGCTGGGTTGCAGCCAACTTTAGAGTCTTGCACATTGCTTGTTGAGGCATATGGGCAGGCTGGTGACCCTGATCAGGCAAGAAGCAACTTCGACTACATGATACAAATTGGACACAAACCAGATGACAGGTGCACTGCAAGTATGATTGCTGCTTATGGGAAGAAAAATTTATTAGACAAGGCACTGAGTTTTTTGTTCGAGCTCAAAAAGAATGGATTTGAGCCAGGGGTTGCAACCTATACTGTTCTTGTAGATTGGTTGGGCAAGTTGCAACTGCTTGATGAAGCTGAGCAGTTATTAGGCAAGATAGTAGAGCTGGGCGAAACCCCGCCTGTTAAGGTCCATGTAAGCCTTTGTGATATGTACTCCAGGGCAGGATATGAGAAAAAAGCGCTTCAAGCTCTAGGGACTGTGGAGGCAAAGAAGGATCAGTTGGGTTCAGATGATTATGAGAGGATTGTAAATGGGCTCATAGCTGGTGGATTTGTGCAGGAAGCACGGAGGATACATGGGCTCATGGAGGCCCAAGGTTTTTCCACGTCGGAACCACTTAAGGTGGCTCTTATGGCATCTCAAGCTTTCGGCCGCAAAAGACCATCAATGAGATGGTGA 2190 43.74 MNLKRLICKQAIRNFSTIDRRFLSHRRYIFGIGTNITTSTPISSSFHSANESDASISLQNPKPPEPNSTFYRRIHYTRETKLGFSANEAKLESEVSEEDDGTMNEFLSRFVFIMRGKLAEAYSDGDKQTIDKMLLIIVDKVVSEMEKAGLEQMRDAAMATPSHDLSVDLWTTVWEVSNMVLEDMRKAAKKEKMKGFLLCEEVQEMCRFAGEVGIRGDMLREFRFKWAREKMEESEFYEGLKRLKEEAQAQEEGAEDKQSKTVREEEVEVYNEEKAKDFSLPKRHGKIKYKIYGLDLSDPKWGDVADKVHETEEMLWPQEPKPISGKCELVTKQILSLKEGDDPAPLVVEWIELLQPSRVDWMALLDRLKEQNTQLYYKVAELLLSEESFQTNIRDYSKLIDAHAKENHIEDAERVLKKMSEKGIQPDILTGSVLVHMYSKVGNIDRAKEAFERLRSQGFQPDEKIFNSMIMAYVNAGQPKLGVSLIREMEARDIKTTKEIYMALLRSFSQHGDISGAGQIATNMQFAGLQPTLESCTLLVEAYGQAGDPDQARSNFDYMIQIGHKPDDRCTASMIAAYGKKNLLDKALSFLFELKKNGFEPGVATYTVLVDWLGKLQLLDEAEQLLGKIVELGETPPVKVHVSLCDMYSRAGYEKKALQALGTVEAKKDQLGSDDYERIVNGLIAGGFVQEARRIHGLMEAQGFSTSEPLKVALMASQAFGRKRPSMRW 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11914968 11917964 + Conep07aG0188300.1 Cone7ag1828 442424

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1828 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 532 566 IPR002885 -
Cone7ag1828 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 602 636 IPR002885 -
Cone7ag1828 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 567 601 IPR002885 -
Cone7ag1828 729 PANTHER OS07G0661900 PROTEIN 92 723 - -
Cone7ag1828 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 462 496 IPR002885 -
Cone7ag1828 729 Pfam Pentacotripeptide-repeat region of PRORP 444 552 IPR033443 -
Cone7ag1828 729 Gene3D Tetratricopeptide repeat domain 349 478 IPR011990 GO:0005515(InterPro)
Cone7ag1828 729 Pfam PPR repeat family 396 440 IPR002885 -
Cone7ag1828 729 Pfam PPR repeat family 573 614 IPR002885 -
Cone7ag1828 729 Coils Coil 402 422 - -
Cone7ag1828 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 427 461 IPR002885 -
Cone7ag1828 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 392 426 IPR002885 -
Cone7ag1828 729 Coils Coil 237 260 - -
Cone7ag1828 729 NCBIfam pentatricopeptide repeat 433 463 IPR002885 -
Cone7ag1828 729 NCBIfam pentatricopeptide repeat 465 495 IPR002885 -
Cone7ag1828 729 NCBIfam pentatricopeptide repeat 573 602 IPR002885 -
Cone7ag1828 729 NCBIfam pentatricopeptide repeat 396 428 IPR002885 -
Cone7ag1828 729 Gene3D Tetratricopeptide repeat domain 480 681 IPR011990 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1828 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0387 Cone-Chr11:1905086 Cone7ag1828 Cone-Chr7:11914968 2.14E-19 transposed
Cone4ag1917 Cone-Chr4:13615013 Cone7ag1828 Cone-Chr7:11914968 3.03E-33 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g957 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1917 Cone7ag1828 . . . . . . Blo17g00795 . Bda08g01279 . . Bpe05g00093 . . . . . . . . . Cpe11g00210 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010753 0 1 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 1 1 1 1 30