Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone7ag1830 | ATGCCGTTTAAAAGAATAGTCCGTGTGCTGAGGGAGATGCGGTATGCCATTGGAAACAGAGGATCGGGAGAAGGAAGGCAAACACTTGGCAAAGGAAATTCCTTTATTGCCCCCGATCAATCATCATCATCACATTCATCTTCATCTTCATCTTCTTCTGAAACGAGTTTGCAGCAAAGCCGCTGGGCAAACATGCCGCCTGAGTTGCTTTTGAACGTGATCCAACTGGTGGAAGCAAGTGCTGCCCCGTGGCCTGCTAGGAGGGACGTCGTTGCTTGTGCTTCCGTTTGTAGGTCATGGCGGCTGATCACTAAAGAGGTTCTCAAGACTCCCGAACAATGTGGCTTGATCACTTTTCCGATTTCACTCAAGCAGCCGGGACCAAGAGAAGCTCCAATCCAGTGTTTTATCAAGAGGGAAAGGGCAACTTCGACATACAGACTCTACCTTGGTCTAAGTCCTGGAGATATGAGCAAACTGTTGCTAGCAGCAAGAAAGATCAGACGGGCAACCAGTAGCGAGTTTGTAATATCATTAGCTGCAGATTATTTCTCTCGAGCTAGCAATACTTATATTGGAAAGCTAAGGTCGAATTTTCTCGGGACAAGGTTTTGCATTCTTGACAGCCAGCCTCCACATGACCCTTCATTGCAAACAAGTTATAGATCTGAAAGAAGAATCCACTCGAAGCAAGTTTCTCCGAGAGTACCAGCCAGTAACTACAATGTAGCCACCATATCTTATGAGCTCAATGTTCTACGGACAAGAGGTCCGAGGAGAATGCAATGCACCATGCATTCGATACTCATCTCCGCTATTCAAGAAGGCGGCTCCGCGCCTACTCCTACCGAGTTCACTAACTACCTTCACGAGAAAGGCAGTCAGACCCCTGTTTCAAAGGGAAAAAATAGAATGGGTGAAGATAGTAAGTCGAGCTCGTTAAGAACTGTTTGTGAACCGCCACTTGAGGGTTCTAAGTATCCAATTGTGTTGAGAAACAAAGCTCCTAGATGGCATGAACAGCTTCAATGCTGGTGCTTAAATTTCAAAGGGCGTGTAACCGTTGCCTCCGTGAAGAATTTCCAGCTCGTTGCCTCTGCAGAGTCTTGCCAAAATGTTCCACTTGGTGAACAAGAAAAAGTAATTTTACAGTTTGGTAAAATCGGGAAAGACATTTTTACTATGGATTATAGGTATCCCCTCTCTGCATTTCAAGCTTTTGCTATCTGCTTGAGCAGCTTCGACACTAAACCGGCCTGTGAATGA | 1266 | 45.73 | MPFKRIVRVLREMRYAIGNRGSGEGRQTLGKGNSFIAPDQSSSSHSSSSSSSSETSLQQSRWANMPPELLLNVIQLVEASAAPWPARRDVVACASVCRSWRLITKEVLKTPEQCGLITFPISLKQPGPREAPIQCFIKRERATSTYRLYLGLSPGDMSKLLLAARKIRRATSSEFVISLAADYFSRASNTYIGKLRSNFLGTRFCILDSQPPHDPSLQTSYRSERRIHSKQVSPRVPASNYNVATISYELNVLRTRGPRRMQCTMHSILISAIQEGGSAPTPTEFTNYLHEKGSQTPVSKGKNRMGEDSKSSSLRTVCEPPLEGSKYPIVLRNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVASAESCQNVPLGEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE | 421 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 11921540 | 11923937 | - | Conep07aG0188500.1 | Cone7ag1830 | 442426 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone7ag1830 | 421 | SUPERFAMILY | Tubby C-terminal domain-like | 111 | 421 | IPR025659 | - | |
Cone7ag1830 | 421 | PRINTS | Tubby superfamily signature | 378 | 397 | IPR000007 | - | |
Cone7ag1830 | 421 | PRINTS | Tubby superfamily signature | 175 | 191 | IPR000007 | - | |
Cone7ag1830 | 421 | PRINTS | Tubby superfamily signature | 191 | 215 | IPR000007 | - | |
Cone7ag1830 | 421 | PRINTS | Tubby superfamily signature | 331 | 348 | IPR000007 | - | |
Cone7ag1830 | 421 | PRINTS | Tubby superfamily signature | 349 | 365 | IPR000007 | - | |
Cone7ag1830 | 421 | PRINTS | Tubby superfamily signature | 399 | 421 | IPR000007 | - | |
Cone7ag1830 | 421 | PRINTS | Tubby superfamily signature | 240 | 267 | IPR000007 | - | |
Cone7ag1830 | 421 | PANTHER | TUBBY-RELATED | 45 | 420 | - | - | |
Cone7ag1830 | 421 | Gene3D | Tubby Protein; Chain A | 120 | 421 | IPR025659 | - | |
Cone7ag1830 | 421 | SUPERFAMILY | F-box domain | 51 | 104 | IPR036047 | GO:0005515(InterPro) | |
Cone7ag1830 | 421 | MobiDBLite | consensus disorder prediction | 20 | 58 | - | - | |
Cone7ag1830 | 421 | MobiDBLite | consensus disorder prediction | 292 | 316 | - | - | |
Cone7ag1830 | 421 | ProSitePatterns | Tub family signature 2. | 406 | 421 | IPR018066 | - | |
Cone7ag1830 | 421 | CDD | F-box_AtTLP-like | 62 | 106 | - | - | |
Cone7ag1830 | 421 | MobiDBLite | consensus disorder prediction | 26 | 58 | - | - | |
Cone7ag1830 | 421 | MobiDBLite | consensus disorder prediction | 215 | 234 | - | - | |
Cone7ag1830 | 421 | ProSitePatterns | Tub family signature 1. | 349 | 362 | IPR018066 | - | |
Cone7ag1830 | 421 | Pfam | Tub family | 123 | 416 | IPR000007 | - | |
Cone7ag1830 | 421 | Gene3D | - | 43 | 108 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone7ag0180 | Cone-Chr7:753931 | Cone7ag1830 | Cone-Chr7:11921540 | 8.43E-150 | dispersed | |
Cone7ag1830 | Cone-Chr7:11921540 | Cone8ag0970 | Cone-Chr8:9140265 | 3.86E-139 | dispersed | |
Cone4ag1918 | Cone-Chr4:13616392 | Cone7ag1830 | Cone-Chr7:11921540 | 1.47E-269 | wgd | |
Cone6ag1629 | Cone-Chr6:12539797 | Cone7ag1830 | Cone-Chr7:11921540 | 2.33E-172 | wgd | |
Cone7ag1830 | Cone-Chr7:11921540 | Cone9ag1554 | Cone-Chr9:11270251 | 5.13E-175 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46598 | PF05701 | WEMBL | 1.50E-252 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone7ag1830 | K19600 | - | vvi:100253937 | 575.474 |