Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1830 ATGCCGTTTAAAAGAATAGTCCGTGTGCTGAGGGAGATGCGGTATGCCATTGGAAACAGAGGATCGGGAGAAGGAAGGCAAACACTTGGCAAAGGAAATTCCTTTATTGCCCCCGATCAATCATCATCATCACATTCATCTTCATCTTCATCTTCTTCTGAAACGAGTTTGCAGCAAAGCCGCTGGGCAAACATGCCGCCTGAGTTGCTTTTGAACGTGATCCAACTGGTGGAAGCAAGTGCTGCCCCGTGGCCTGCTAGGAGGGACGTCGTTGCTTGTGCTTCCGTTTGTAGGTCATGGCGGCTGATCACTAAAGAGGTTCTCAAGACTCCCGAACAATGTGGCTTGATCACTTTTCCGATTTCACTCAAGCAGCCGGGACCAAGAGAAGCTCCAATCCAGTGTTTTATCAAGAGGGAAAGGGCAACTTCGACATACAGACTCTACCTTGGTCTAAGTCCTGGAGATATGAGCAAACTGTTGCTAGCAGCAAGAAAGATCAGACGGGCAACCAGTAGCGAGTTTGTAATATCATTAGCTGCAGATTATTTCTCTCGAGCTAGCAATACTTATATTGGAAAGCTAAGGTCGAATTTTCTCGGGACAAGGTTTTGCATTCTTGACAGCCAGCCTCCACATGACCCTTCATTGCAAACAAGTTATAGATCTGAAAGAAGAATCCACTCGAAGCAAGTTTCTCCGAGAGTACCAGCCAGTAACTACAATGTAGCCACCATATCTTATGAGCTCAATGTTCTACGGACAAGAGGTCCGAGGAGAATGCAATGCACCATGCATTCGATACTCATCTCCGCTATTCAAGAAGGCGGCTCCGCGCCTACTCCTACCGAGTTCACTAACTACCTTCACGAGAAAGGCAGTCAGACCCCTGTTTCAAAGGGAAAAAATAGAATGGGTGAAGATAGTAAGTCGAGCTCGTTAAGAACTGTTTGTGAACCGCCACTTGAGGGTTCTAAGTATCCAATTGTGTTGAGAAACAAAGCTCCTAGATGGCATGAACAGCTTCAATGCTGGTGCTTAAATTTCAAAGGGCGTGTAACCGTTGCCTCCGTGAAGAATTTCCAGCTCGTTGCCTCTGCAGAGTCTTGCCAAAATGTTCCACTTGGTGAACAAGAAAAAGTAATTTTACAGTTTGGTAAAATCGGGAAAGACATTTTTACTATGGATTATAGGTATCCCCTCTCTGCATTTCAAGCTTTTGCTATCTGCTTGAGCAGCTTCGACACTAAACCGGCCTGTGAATGA 1266 45.73 MPFKRIVRVLREMRYAIGNRGSGEGRQTLGKGNSFIAPDQSSSSHSSSSSSSSETSLQQSRWANMPPELLLNVIQLVEASAAPWPARRDVVACASVCRSWRLITKEVLKTPEQCGLITFPISLKQPGPREAPIQCFIKRERATSTYRLYLGLSPGDMSKLLLAARKIRRATSSEFVISLAADYFSRASNTYIGKLRSNFLGTRFCILDSQPPHDPSLQTSYRSERRIHSKQVSPRVPASNYNVATISYELNVLRTRGPRRMQCTMHSILISAIQEGGSAPTPTEFTNYLHEKGSQTPVSKGKNRMGEDSKSSSLRTVCEPPLEGSKYPIVLRNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVASAESCQNVPLGEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11921540 11923937 - Conep07aG0188500.1 Cone7ag1830 442426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1830 421 SUPERFAMILY Tubby C-terminal domain-like 111 421 IPR025659 -
Cone7ag1830 421 PRINTS Tubby superfamily signature 378 397 IPR000007 -
Cone7ag1830 421 PRINTS Tubby superfamily signature 175 191 IPR000007 -
Cone7ag1830 421 PRINTS Tubby superfamily signature 191 215 IPR000007 -
Cone7ag1830 421 PRINTS Tubby superfamily signature 331 348 IPR000007 -
Cone7ag1830 421 PRINTS Tubby superfamily signature 349 365 IPR000007 -
Cone7ag1830 421 PRINTS Tubby superfamily signature 399 421 IPR000007 -
Cone7ag1830 421 PRINTS Tubby superfamily signature 240 267 IPR000007 -
Cone7ag1830 421 PANTHER TUBBY-RELATED 45 420 - -
Cone7ag1830 421 Gene3D Tubby Protein; Chain A 120 421 IPR025659 -
Cone7ag1830 421 SUPERFAMILY F-box domain 51 104 IPR036047 GO:0005515(InterPro)
Cone7ag1830 421 MobiDBLite consensus disorder prediction 20 58 - -
Cone7ag1830 421 MobiDBLite consensus disorder prediction 292 316 - -
Cone7ag1830 421 ProSitePatterns Tub family signature 2. 406 421 IPR018066 -
Cone7ag1830 421 CDD F-box_AtTLP-like 62 106 - -
Cone7ag1830 421 MobiDBLite consensus disorder prediction 26 58 - -
Cone7ag1830 421 MobiDBLite consensus disorder prediction 215 234 - -
Cone7ag1830 421 ProSitePatterns Tub family signature 1. 349 362 IPR018066 -
Cone7ag1830 421 Pfam Tub family 123 416 IPR000007 -
Cone7ag1830 421 Gene3D - 43 108 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag0180 Cone-Chr7:753931 Cone7ag1830 Cone-Chr7:11921540 8.43E-150 dispersed
Cone7ag1830 Cone-Chr7:11921540 Cone8ag0970 Cone-Chr8:9140265 3.86E-139 dispersed
Cone4ag1918 Cone-Chr4:13616392 Cone7ag1830 Cone-Chr7:11921540 1.47E-269 wgd
Cone6ag1629 Cone-Chr6:12539797 Cone7ag1830 Cone-Chr7:11921540 2.33E-172 wgd
Cone7ag1830 Cone-Chr7:11921540 Cone9ag1554 Cone-Chr9:11270251 5.13E-175 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46598 PF05701 WEMBL 1.50E-252 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1830 K19600 - vvi:100253937 575.474