Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1845 ATGGGGTCAGCTTGTCATGTTGCTGCAAGGGATAAATCTCTACCAGAGAGAATTGGTGGAGAAAGGTCGCAAAACAGCACCTTGTATCCATCATCATGGAGCTTTTGCTGGGATAATCGTAGGCGTATGGTTCGTGAAGTTGAGAATCCAATGCATCGAGTGCCTCATGGACCAGGCAGCATACAAATAAAAGGAACATTAGGTTCCGAGAGAAGTACTTTCTCAGGTGGAAGGTCTCATGAGTATTTTGGAACACCTATTTCCCAAAAGCCTCTAAATCATGAAGAAATATATAGCAAGGCTAAGACTCCAACTTCAGTTCAATCCATGACAAGCATTTATCCTACAGAGGTGAATATCATCACAGAATCTTCTGCAATTGTAGATTCATCTGCACATAATCTTTCATTTTCATTACCTTCAACTTTCTCAACACCGACTGCAGATCATTTGTCTTCCGATACCTATCCACTACTCCTCAACTCCACACCATCTAGGCGGGCCCGTAGGTCGCCGGGGCACCAATTGTTTAGACAGGTTTCTGATAGTCAGATCCTGGGATTAAAATTACCGACTAACAACTCCATAGCCGAAGAAACACCATATCATGCACCTTCAAATTGCAGCAATGACTTAACAACGGGATCAGAATTTGGATCTTCAGATGGGTGGTCCATGCTCACCTTTTATGAGCTTGTGGCTTCTTCTCAGAGAGAAAGATGGTCTTTTGATAGTGAGCACTTAGGCTCAGTGCATGGCCAGAGAAGTGGATCTAGCAGCAGGTTTTTGAGTTCTCCTTCATTGGAGCTACAGACATGTGGAGCTTGCTCAAAACACTTAACTGAAAGTTCTCTATGGAGTGGCAGGAAAACTATTTCTCAAAATCAGCTAGCAGTGATTGCTGTGCTGGGTTGTGAACATGTTTATCATGCAGACTGCTTGGAAGCTGTGACAGAAGATCCTAATAGGTATGAACCAACTTGCCCAATTTGCATGGGTGGAGAGATGCTAGTCTCAAAGATGTCCAAAAAAGCCTCGAGAGGAGAAGCAGATTTAAAGGGGAAGAACTACAGGATATCGAAAAACCGGGTTGTTGATAGTTATCTTGATGATGGCTTCGATGGGTTTAATCACCTTAAAAACATTGAAGAAAAAGGAAAAGTGGGTAGGGCGGGAGGCAGTTCAAGTTCAACGACTACCTTTGCAAAGCCCTCCTTAAGAAGGCACTTTTCACTTGAGTCTAAATGGAGTAGATCTCAATCAGATAATGATTCTTCAAGGAAGAAAGGTTTTTGGGGTAGATACCGCAGGCATTAA 1317 42.98 MGSACHVAARDKSLPERIGGERSQNSTLYPSSWSFCWDNRRRMVREVENPMHRVPHGPGSIQIKGTLGSERSTFSGGRSHEYFGTPISQKPLNHEEIYSKAKTPTSVQSMTSIYPTEVNIITESSAIVDSSAHNLSFSLPSTFSTPTADHLSSDTYPLLLNSTPSRRARRSPGHQLFRQVSDSQILGLKLPTNNSIAEETPYHAPSNCSNDLTTGSEFGSSDGWSMLTFYELVASSQRERWSFDSEHLGSVHGQRSGSSSRFLSSPSLELQTCGACSKHLTESSLWSGRKTISQNQLAVIAVLGCEHVYHADCLEAVTEDPNRYEPTCPICMGGEMLVSKMSKKASRGEADLKGKNYRISKNRVVDSYLDDGFDGFNHLKNIEEKGKVGRAGGSSSSTTTFAKPSLRRHFSLESKWSRSQSDNDSSRKKGFWGRYRRH 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11973578 11975552 + Conep07aG0190000.1 Cone7ag1845 442441

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1845 438 MobiDBLite consensus disorder prediction 412 430 - -
Cone7ag1845 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 260 333 IPR013083 -
Cone7ag1845 438 MobiDBLite consensus disorder prediction 412 438 - -
Cone7ag1845 438 PANTHER EXPRESSED PROTEIN 1 335 - -
Cone7ag1845 438 ProSiteProfiles Zinc finger RING-type profile. 273 331 IPR001841 -
Cone7ag1845 438 MobiDBLite consensus disorder prediction 1 24 - -
Cone7ag1845 438 SUPERFAMILY RING/U-box 272 332 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1845 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0970 Cone-Chr3:5885130 Cone7ag1845 Cone-Chr7:11973578 1.47E-77 dispersed
Cone4ag1933 Cone-Chr4:13672614 Cone7ag1845 Cone-Chr7:11973578 3.28E-243 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g998 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1933 Cone7ag1845 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00392 Cam11g0437 Cec11g0432 Cco11g0426 Clacu11g0560 Cmu11g0417 Cre11g0902 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0023688 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 3