Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1850 ATGATATGGGTTTATTATAAACCAACCCATCATCTAAAATTTCCATTCATCATCAGCATCATGGTTTCTCAAAACTCCCCTCCAAATCCAGGCTCATCAAACATTCTACATCAGTTCATAAACTCGGGCTCCATTACAAGCCAACCCCATTTCCAGTATCATCATTTCAATGATGCATACAACAACAACCCTCATCACTCTCTTGCCTTTTTCCCGGGAGAAAGAATCTCTAGGCCCATAGATCTTGTCCAAGACCCTCCTAATTCGGCCCAAGATGAACCCGAAATCAGCCACACTAGACATTTAATGGATCTCCTCGGAGCAGCAGCCAACGAGACTAACCGTCAAGCTCGAGGCCTTTCCCTCTCTCTTAGCACACACATGCCTTTCCCTTCTTCAGTGGACTATAACAGGCAGAGGACTTGTTCAAATTCAGATCTTATCACCTCCAATTACTTAACCGAACAGCAATTAAGTGAAGAATATTCTTATCTGGCCGGTGCATTTGTTGCTGCTTCATCATCATCTTCATCGTCATCCTCGTTCTCTACTGTCCTTTGCAACTCGAAATATCTAAAACCAGCTCAGTCTCTTCTAGAAGAAGTAGTTAACCTCGGCGTAAAGGCTGCCGACATAAATGATGAGATCATGTATTCAGGAAGTAGTAGAAGAGAAGCTCGGAGTTTGTCTGCTGAATTGAAAGCAGAGCTTTGCAATAACGAGTTCTTGTCAGGGGAGAAACATGAACATCAACTTAGAATCTCAAAGCTCATTGACTTGTTGGAGGAGGTCGATGGTAGGTACGAAAAGTATTGTCATCAAATGGAAGAAGTGGTATCATCATTTGAAGTAATAGCTGGATTAGGGGCCGCGAAATCTTATACTGCACTAGCACTAGAAGCCATGTCCAGGCATTTTAGTAGCCTAAGAGATGCCATAGTTTCTCATATCAAAGTGGAGAAAAGAAAGCTCTTGCATGGTTTACCAAAAATTAATTCCAGATTGTCTCGGCTAAGCTTGTTTGATAGAGAGACGAGAAATAGCAGAACGGCACTTCAACGGCTAGGATTGATTCAAAGTCCAGGACAAGTATGGAGACCGATCAGAGGATTGCCGGAGACCTCTGTCACTATCCTACGCTCTTGGCTTTTCGAACATTTTCTCCACCCGTATCCAAATGATTCTGAGAAGTTAATGTTAGCATCACAGACAGGCCTCAGCAAGAACCAAGTTTCCAATTGGTTCATTAATGCACGTGTTCGGCTTTGGAAGCCGATGATAGAAGAAATGTATAAAGAAGAGTTCGGCGAATCATTAGAAGACTCAAATCCGTTAGCTAGCGGTTCATTGATCGGAGAAGGCTTCACAGATCATGGAGAATGA 1383 42.81 MIWVYYKPTHHLKFPFIISIMVSQNSPPNPGSSNILHQFINSGSITSQPHFQYHHFNDAYNNNPHHSLAFFPGERISRPIDLVQDPPNSAQDEPEISHTRHLMDLLGAAANETNRQARGLSLSLSTHMPFPSSVDYNRQRTCSNSDLITSNYLTEQQLSEEYSYLAGAFVAASSSSSSSSSFSTVLCNSKYLKPAQSLLEEVVNLGVKAADINDEIMYSGSSRREARSLSAELKAELCNNEFLSGEKHEHQLRISKLIDLLEEVDGRYEKYCHQMEEVVSSFEVIAGLGAAKSYTALALEAMSRHFSSLRDAIVSHIKVEKRKLLHGLPKINSRLSRLSLFDRETRNSRTALQRLGLIQSPGQVWRPIRGLPETSVTILRSWLFEHFLHPYPNDSEKLMLASQTGLSKNQVSNWFINARVRLWKPMIEEMYKEEFGESLEDSNPLASGSLIGEGFTDHGE 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11983330 11985739 - Conep07aG0190500.1 Cone7ag1850 442446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1850 460 CDD homeodomain 365 426 IPR001356 GO:0003677(InterPro)
Cone7ag1850 460 MobiDBLite consensus disorder prediction 439 460 - -
Cone7ag1850 460 ProSiteProfiles 'Homeobox' domain profile. 384 425 IPR001356 GO:0003677(InterPro)
Cone7ag1850 460 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 151 438 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone7ag1850 460 Pfam Associated with HOX 185 314 IPR006563 -
Cone7ag1850 460 Gene3D - 364 439 - -
Cone7ag1850 460 SUPERFAMILY Homeodomain-like 371 432 IPR009057 -
Cone7ag1850 460 SMART prehox3 180 315 IPR006563 -
Cone7ag1850 460 Pfam Homeobox KN domain 382 421 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone7ag1850 460 SMART HOX_1 365 429 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag1850 Cone-Chr7:11983330 Cone8ag0284 Cone-Chr8:1635714 5.79E-66 dispersed
Cone7ag1850 Cone-Chr7:11983330 Cone7ag1851 Cone-Chr7:11987792 1.21E-67 tandem
Cone12ag1171 Cone-Chr12:9284332 Cone7ag1850 Cone-Chr7:11983330 1.64E-70 wgd
Cone4ag1938 Cone-Chr4:13683402 Cone7ag1850 Cone-Chr7:11983330 9.04E-290 wgd
Cone7ag1850 Cone-Chr7:11983330 Cone8ag1218 Cone-Chr8:10314758 4.71E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46600 PF00069 Pkinase 9.50E-67 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1850 - - - 0.0