Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1851 ATGGCTACTTATGTTCCAAACTTAAGCAATCAAAGAGATGCTATGCTGGCTCCCTACGTGGGAGACCAGAAATTCAGTTATATGTTGGAACCACCCTTATGTTCCGGTAACATCTCGTTGTACCCGACTCAACATCCTTATCTTGGCTCCTACTCTGATATCTTGTCTCAAGGATCACCACCACCTATAAATACCAGAATCGGTTTTCAAGCCTTTGTGGACCAGGAAAAAGCTGAAACAGGCGATCGAGTAGGATTATCACTTAGCCTCGGGTCCCAGTTAGTCTATAGTTCTATCTCCGCTCCTTCATTTTCGTTCTTGAATTCTCATCCTCTGAATTTAGAAATAAGTCCAGTTGGTTGTGAAGGGGATGAAGGAAAACACACTACCTTCAAAACAGAAGCTTTGTCCCATAGAACAACCTCAGATCTTTATCAGCTATACAATGTGTCCGATTGTTCTTCGGACGCTATGTTAAGTTCAAAATACCTCAAGGCGGCACAACAATTGCTCGATGAATTGGTTAATGTTCGAGTGGCTTTGAAGGAGTTTAAGTCTAACAAAAAGAATATCTTCAATGAAACTGGTCCAGATGGAGGAACTAAGAACCAAGATTTGAAAGCCAAATTATCTACCGAGCTATCACCTTTAGAGCGGGAAGACTCGGAGAATAGAAATACCAAACTTCTGTCCATGTTAAATGAGGTAGATAGAAGGTACAAGCTACACTACCATCAGATGAAAACTATGGTGTCATCATTTGACATGGTAATGGGAATTGGGGCAGCAGAGTCATACATGGAACTTGCTCGCCGAAAAATTTCCTGCCATTTCCGGCGATTGCGGGATGCAATTAGAGAGCAGATTCTGATCAACAGAAGAATCTTGGGAGAGCAAGACTCTTCACTAAATGGTCAAGATGGAATAATACCGTCTCTCCGCTATGTAGACCAGCAGCTCAGACAGCAAACTGCTTTTCGACAACTTGGTTTATCCCCACATTCTTGGAGGCCTCCAAGAGGCCTTCCTCAAACCTCCGTTTCGATTCTCCGTGCCTGGTTGTTTGAACATTTCCTTCATCCCTACCCGAAGGATTTGGAGAAAATGATGCTAGCAAGAGAGACAGGGTTGACGAAAAATCAGGTTGCAAATTGGTTTATAAATGCTCGAGTTCGTCTGTGGAAACCTATGGTTGAGGAGATGTATAAGAAGGAATTCGGAGATTCTTTGATAGATCTTAAGTCTCCACCAGAAAATTCAGAGAAGGATGACAACATTGCACAAGACGTTTTACAACCAGGCCGGAATTGGGACGATAACTTTCCTGGCGATGTTACAACATGTGACATATCAAAGTCGGGTTATTTTTCTGTTGGCAATGAGGTATCACTTTCTTTTGAGCTCCGTCGCTTTGAGAAGGAAGAGGGGCCCACACTGTAA 1440 42.85 MATYVPNLSNQRDAMLAPYVGDQKFSYMLEPPLCSGNISLYPTQHPYLGSYSDILSQGSPPPINTRIGFQAFVDQEKAETGDRVGLSLSLGSQLVYSSISAPSFSFLNSHPLNLEISPVGCEGDEGKHTTFKTEALSHRTTSDLYQLYNVSDCSSDAMLSSKYLKAAQQLLDELVNVRVALKEFKSNKKNIFNETGPDGGTKNQDLKAKLSTELSPLEREDSENRNTKLLSMLNEVDRRYKLHYHQMKTMVSSFDMVMGIGAAESYMELARRKISCHFRRLRDAIREQILINRRILGEQDSSLNGQDGIIPSLRYVDQQLRQQTAFRQLGLSPHSWRPPRGLPQTSVSILRAWLFEHFLHPYPKDLEKMMLARETGLTKNQVANWFINARVRLWKPMVEEMYKKEFGDSLIDLKSPPENSEKDDNIAQDVLQPGRNWDDNFPGDVTTCDISKSGYFSVGNEVSLSFELRRFEKEEGPTL 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11987792 11989493 - Conep07aG0190600.1 Cone7ag1851 442447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1851 479 SMART prehox3 155 287 IPR006563 -
Cone7ag1851 479 Pfam Homeobox KN domain 353 392 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone7ag1851 479 Coils Coil 167 187 - -
Cone7ag1851 479 Gene3D - 333 409 - -
Cone7ag1851 479 ProSiteProfiles 'Homeobox' domain profile. 355 396 IPR001356 GO:0003677(InterPro)
Cone7ag1851 479 CDD homeodomain 336 397 IPR001356 GO:0003677(InterPro)
Cone7ag1851 479 SMART HOX_1 336 400 IPR001356 GO:0003677(InterPro)
Cone7ag1851 479 SUPERFAMILY Homeodomain-like 338 403 IPR009057 -
Cone7ag1851 479 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 113 414 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone7ag1851 479 Pfam Associated with HOX 158 285 IPR006563 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1939 Cone-Chr4:13687752 Cone7ag1851 Cone-Chr7:11987792 2.22E-279 dispersed
Cone7ag1851 Cone-Chr7:11987792 Cone8ag1218 Cone-Chr8:10314758 3.08E-86 dispersed
Cone7ag1850 Cone-Chr7:11983330 Cone7ag1851 Cone-Chr7:11987792 1.21E-67 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46601 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1851 - - - 0.0