Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1852 ATGGTAAGTCACATGCATATTAATAATTTTGAGGAAGCAGGGAAGAAAGTGGTGTCATCTGGACCATGGGGCGGTCAGGGCGGTTCCCTTTGGGACGATGGAGCTGCCTCAACAATAAGGCAAATTGTAATTTGTCATGGCGCTGGCATTGACGCCATACAGTTCGAATACGACAAGAAAGGAACCTCCTTTTGGTCTGAAAAACATGGTGGAACTGGAGCCACTAAAACTGACAGGGTTAATCTTGATTACCCGGCTGAGTACTTGACTTCAATTCGGGGGCACTATGGCAGCTTACAAGAATGGAGGGGCCCATTGCTTGTCCGCTCACTCACTTTCCAAACCAACAGAAAAACTTATGGCCCATTTGGAGTCGAACTGGGCTCATGCTTCTCCTCCCCTGCTGGTACTGGATCGGGGTCCAAAATAGTTGGGTTTCATGGCAGAGCAGGGTGGTTCCTTGACGCAATCGGAGTCTACTCCAAGCCCATTCACGATCAGAAGCAAATCAATCCCGCCAAAACTGATCCGATCCAGCGACACAACTATCTTGCAACTAATGCAACTCACAACAGCATCAATGGCCTCTCTGTATTACAGGGCAGCGTCGGTCAGAATTACGACATCGTTTTGGCTGTTAGACAGAGAGATGATTTCGGCAAGCCTATTCCCGCTAAAACCCCTGGCGCCAAGATTCTTGATTATCAGGCTGACAGCGATTCAGAACATGAAGTAGAACAACCTAAAAGCAAGATGGCTGTAAAATTTGTGTCGAAAGTTGAGGGAGTGGTAACATATGGACCTTGGGGTGGTAATGGTGGAACTGTGTTTGATGATGGAGCTCATGTTGGCATTAGACAGATAACTGTGTCACGCAATGTCGGAATTGTATACATTAAAGTACTATATGATTGTGATGGTGAACCTCTGTGGGGTAACCGACAAGGCAGTACCGGAGGATTCAAACATGACAAGATAATTTTCGATTATCCGAGCGAAATCTTGACGCATATAACAGGCCATTATGGGCCGGTAATGTACATGGGTCCGAGTGTGATAAGGTCTCTGACATTCCACACAACAAAGGGGAAGCATGGACCATTTGGGGAAGAAGTAGGGACCCCTTTTAGTACTAAGTTGAAAGAAGGCAAAATTGTTGGGTTCCATGGAAGGAAAGGTCTCTTCTTAGATGCAATTGGTGTGCATGTTATAGAAGGAAAGGTAACTCCGACAGCAGCAGCAGGAGCAGCAGCCACTACTACACAGCTTACTCACTCCAAATCTATTGTCCTCAAACAACCACAACCACAACAACAACCCCCCATTTCTCAGATTGAGAATCCTCAGTGGTCTCATAAACTAGTACTTGCCTCCAAGCAAACACCCAGTGAAGGGGTTGCTTGTGGGGTTGTCAAAGAACCGGCACCATGTGGACCCGGTCCATGGGGTGGGGAAGGAGGAAGACCATGGGATGATGGTGTGTTCTCTGGGATTAAACAGATATACATAATGAGGTCAATTGGTGAAGGTATCTGCTCAATACAGATCGAATATGATCGAAATGGGCAGTCTGTTTGGTCGGTTAAGCATGGAGGGAATTCAGGAACCTCCATACACCGGCTGAAGTTAGAGTATCCACATGAGGTGCTGAGTTGCATATCAGGATACTATGGACCCATAAGCAGCAGAGATGAGAGGAGTAAAGTAGTGAAATCACTCACATTTTTCACTAGCAGAGGCAAATACGGTCCGTTTGGAGAGGAGATAGGAACGTTTTTCACCTCAACAACGACGGAAGGGAAGGTGGTGGGCTTCCATGGGAGGAGCAGCTTGTACTTGGATGCCATTGGAGTGCATATGCAGCACTGGCTGGGCAACCAGAAAAATCCAAAGTCTTCTCTCTTCAAGTTATTCTGA 1917 46.74 MVSHMHINNFEEAGKKVVSSGPWGGQGGSLWDDGAASTIRQIVICHGAGIDAIQFEYDKKGTSFWSEKHGGTGATKTDRVNLDYPAEYLTSIRGHYGSLQEWRGPLLVRSLTFQTNRKTYGPFGVELGSCFSSPAGTGSGSKIVGFHGRAGWFLDAIGVYSKPIHDQKQINPAKTDPIQRHNYLATNATHNSINGLSVLQGSVGQNYDIVLAVRQRDDFGKPIPAKTPGAKILDYQADSDSEHEVEQPKSKMAVKFVSKVEGVVTYGPWGGNGGTVFDDGAHVGIRQITVSRNVGIVYIKVLYDCDGEPLWGNRQGSTGGFKHDKIIFDYPSEILTHITGHYGPVMYMGPSVIRSLTFHTTKGKHGPFGEEVGTPFSTKLKEGKIVGFHGRKGLFLDAIGVHVIEGKVTPTAAAGAAATTTQLTHSKSIVLKQPQPQQQPPISQIENPQWSHKLVLASKQTPSEGVACGVVKEPAPCGPGPWGGEGGRPWDDGVFSGIKQIYIMRSIGEGICSIQIEYDRNGQSVWSVKHGGNSGTSIHRLKLEYPHEVLSCISGYYGPISSRDERSKVVKSLTFFTSRGKYGPFGEEIGTFFTSTTTEGKVVGFHGRSSLYLDAIGVHMQHWLGNQKNPKSSLFKLF 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11990432 11993090 - Conep07aG0190700.1 Cone7ag1852 442448

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1852 638 Pfam Jacalin-like lectin domain 266 402 IPR001229 -
Cone7ag1852 638 Pfam Jacalin-like lectin domain 20 160 IPR001229 -
Cone7ag1852 638 Pfam Jacalin-like lectin domain 480 619 IPR001229 -
Cone7ag1852 638 ProSiteProfiles Jacalin-type lectin domain profile. 17 163 IPR001229 -
Cone7ag1852 638 SUPERFAMILY Mannose-binding lectins 17 163 IPR036404 -
Cone7ag1852 638 ProSiteProfiles Jacalin-type lectin domain profile. 263 405 IPR001229 -
Cone7ag1852 638 SUPERFAMILY Mannose-binding lectins 263 403 IPR036404 -
Cone7ag1852 638 Gene3D - 4 161 IPR036404 -
Cone7ag1852 638 Gene3D - 471 621 IPR036404 -
Cone7ag1852 638 Gene3D - 253 404 IPR036404 -
Cone7ag1852 638 CDD Jacalin 274 403 IPR033734 GO:0030246(InterPro)
Cone7ag1852 638 CDD Jacalin 28 160 IPR033734 GO:0030246(InterPro)
Cone7ag1852 638 FunFam Jacalin-related lectin 33 261 405 - -
Cone7ag1852 638 ProSiteProfiles Jacalin-type lectin domain profile. 476 622 IPR001229 -
Cone7ag1852 638 SMART Jacalin_2 28 163 IPR001229 -
Cone7ag1852 638 SMART Jacalin_2 487 622 IPR001229 -
Cone7ag1852 638 SMART Jacalin_2 274 405 IPR001229 -
Cone7ag1852 638 SUPERFAMILY Mannose-binding lectins 476 620 IPR036404 -
Cone7ag1852 638 CDD Jacalin 490 621 IPR033734 GO:0030246(InterPro)
Cone7ag1852 638 PANTHER JACALIN-RELATED LECTIN 3 259 624 - -
Cone7ag1852 638 FunFam Jacalin-related lectin 33 15 164 - -
Cone7ag1852 638 FunFam Jacalin-related lectin 33 479 623 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1852 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1012 Blo01g01579 . Bda01g00513 . . . . Bma01g02342 Cmo05g00275 Cmo12g00391 . . . Car12g00417 . . Cpe07g00395 . . . . . . . Cla08g01457 . . . . . . . Cone7ag1852 . . . . . Cme03g01921 . . . . . . . . Sed01g2548 . . Cma12g00440 Cma05g00270 . . Cpe11g00223 . Bhi09g02137 Tan01g4934 Cmetu04g1048 . . Mch11g0183 . . . . . . . . Lsi08g01363 Csa02g02090 Chy03g01425 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002824 2 1 2 2 1 2 2 2 2 1 1 2 3 1 1 3 2 2 3 2 2 2 2 1 0 1 1 2 3 2 53