Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1860 ATGTCTGGGTTCTATCTAGGAGGAGGAAGATCATCATCACCCAACAAGCAAGAAGAATTGCGAGAGCAACACTTGTTCTTCTACAGATCAAGCGAGGCCGAGATCTATAACAACAACAACATCAACAACAACCCTAAGAAGGCCGCAGGTACTTTCGAGATATGGCCACATCATCACTACACCCATCACCAGGATCAAGACAATTTGGAAAACCACTTGTCGTTTGGAGTGGGACCTAGCCGGAGATCAAGCTTCATGAATGTCGTCTCCGACGAGTCCACGTCCAGATCAGGCGGCTTCACTTTGATGCGACCACAAGTAGGTCCAGGAGCAGGCGTAGGAGGTATGAACTGTCAAGACTGTGGAAACCAAGCCAAGAAGGATTGCTCTCACTTAAGGTGTAGAACTTGCTGCAAGAGCCGAGGGTTTCAGTGCCAGACGCACGTAAAGAGCACGTGGGTTCCGGCCGCTAAACGCCGGGAAAGACAACAAGCCCTTGCCGCGTTACAAAATCAAACGCAACAACAACAGCAACAACAAGATCATGATTTTCGCGCCGGAGAAAATACCAAAAGGCTTAGAGAGAATCAAGGAGCAGCTGTGATCTCTCGTTTACCCATGTCATCTACGTCAGGGATGCATCTTTCGCAATTTCCAGCCGAGGTGAACTCTGCGGCAGTTTTCCGGTGTGTGAAAGTGAGCGCTATGGACGATGAAGATGAGCAGTTTGCTTATCAAACGGCTGTTAACATCAGAGGGCATGTTTTCAAAGGTATCCTCTACGATCAAGGACACGAAGGTCGTTACACTACTGGCGGTGAAACCTCATCTGGCCAACTCGGCGGAGACGGATCAGCCCAACAACTTAATCTCATAGCGGAAGGGCCCGACACCACCGCAAGCACAAGCACAGCAGCCACTGCATTGCTTGACCCTAATTCGCTCTATCCAGCTCCTCTCAATGCTTATATGGCAGCAGCTGGTACGCAGTTCTTCTCACCCTCAAGGTCTTAG 1014 49.8 MSGFYLGGGRSSSPNKQEELREQHLFFYRSSEAEIYNNNNINNNPKKAAGTFEIWPHHHYTHHQDQDNLENHLSFGVGPSRRSSFMNVVSDESTSRSGGFTLMRPQVGPGAGVGGMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQALAALQNQTQQQQQQQDHDFRAGENTKRLRENQGAAVISRLPMSSTSGMHLSQFPAEVNSAAVFRCVKVSAMDDEDEQFAYQTAVNIRGHVFKGILYDQGHEGRYTTGGETSSGQLGGDGSAQQLNLIAEGPDTTASTSTAATALLDPNSLYPAPLNAYMAAAGTQFFSPSRS 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12025045 12026303 - Conep07aG0191500.1 Cone7ag1860 442456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1860 337 Pfam Domain of unknown function (DUF702) 115 266 - -
Cone7ag1860 337 NCBIfam putative zinc finger domain, LRP1 type 117 159 IPR006510 -
Cone7ag1860 337 Coils Coil 159 179 - -
Cone7ag1860 337 NCBIfam LRP1 C-terminal domain 217 264 IPR006511 -
Cone7ag1860 337 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 13 331 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1177 Cone-Chr12:9305921 Cone7ag1860 Cone-Chr7:12025045 2.19E-23 dispersed
Cone12ag1176 Cone-Chr12:9305353 Cone7ag1860 Cone-Chr7:12025045 1.97E-10 wgd
Cone17ag1376 Cone-Chr17:9557174 Cone7ag1860 Cone-Chr7:12025045 5.70E-76 wgd
Cone20ag0106 Cone-Chr20:478496 Cone7ag1860 Cone-Chr7:12025045 2.98E-78 wgd
Cone4ag1946 Cone-Chr4:13719543 Cone7ag1860 Cone-Chr7:12025045 1.05E-175 wgd
Cone6ag1659 Cone-Chr6:12647671 Cone7ag1860 Cone-Chr7:12025045 2.99E-58 wgd
Cone7ag1860 Cone-Chr7:12025045 Cone8ag1222 Cone-Chr8:10333267 1.29E-32 wgd
Cone7ag1860 Cone-Chr7:12025045 Cone8ag0832 Cone-Chr8:8313349 7.45E-49 wgd
Cone7ag1860 Cone-Chr7:12025045 Cone9ag1584 Cone-Chr9:11367151 5.37E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46603 PF02362 B3 1.10E-14 CL0405 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1860 K27807 - csv:101213154 349.747