Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone7ag1860 | ATGTCTGGGTTCTATCTAGGAGGAGGAAGATCATCATCACCCAACAAGCAAGAAGAATTGCGAGAGCAACACTTGTTCTTCTACAGATCAAGCGAGGCCGAGATCTATAACAACAACAACATCAACAACAACCCTAAGAAGGCCGCAGGTACTTTCGAGATATGGCCACATCATCACTACACCCATCACCAGGATCAAGACAATTTGGAAAACCACTTGTCGTTTGGAGTGGGACCTAGCCGGAGATCAAGCTTCATGAATGTCGTCTCCGACGAGTCCACGTCCAGATCAGGCGGCTTCACTTTGATGCGACCACAAGTAGGTCCAGGAGCAGGCGTAGGAGGTATGAACTGTCAAGACTGTGGAAACCAAGCCAAGAAGGATTGCTCTCACTTAAGGTGTAGAACTTGCTGCAAGAGCCGAGGGTTTCAGTGCCAGACGCACGTAAAGAGCACGTGGGTTCCGGCCGCTAAACGCCGGGAAAGACAACAAGCCCTTGCCGCGTTACAAAATCAAACGCAACAACAACAGCAACAACAAGATCATGATTTTCGCGCCGGAGAAAATACCAAAAGGCTTAGAGAGAATCAAGGAGCAGCTGTGATCTCTCGTTTACCCATGTCATCTACGTCAGGGATGCATCTTTCGCAATTTCCAGCCGAGGTGAACTCTGCGGCAGTTTTCCGGTGTGTGAAAGTGAGCGCTATGGACGATGAAGATGAGCAGTTTGCTTATCAAACGGCTGTTAACATCAGAGGGCATGTTTTCAAAGGTATCCTCTACGATCAAGGACACGAAGGTCGTTACACTACTGGCGGTGAAACCTCATCTGGCCAACTCGGCGGAGACGGATCAGCCCAACAACTTAATCTCATAGCGGAAGGGCCCGACACCACCGCAAGCACAAGCACAGCAGCCACTGCATTGCTTGACCCTAATTCGCTCTATCCAGCTCCTCTCAATGCTTATATGGCAGCAGCTGGTACGCAGTTCTTCTCACCCTCAAGGTCTTAG | 1014 | 49.8 | MSGFYLGGGRSSSPNKQEELREQHLFFYRSSEAEIYNNNNINNNPKKAAGTFEIWPHHHYTHHQDQDNLENHLSFGVGPSRRSSFMNVVSDESTSRSGGFTLMRPQVGPGAGVGGMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQALAALQNQTQQQQQQQDHDFRAGENTKRLRENQGAAVISRLPMSSTSGMHLSQFPAEVNSAAVFRCVKVSAMDDEDEQFAYQTAVNIRGHVFKGILYDQGHEGRYTTGGETSSGQLGGDGSAQQLNLIAEGPDTTASTSTAATALLDPNSLYPAPLNAYMAAAGTQFFSPSRS | 337 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 12025045 | 12026303 | - | Conep07aG0191500.1 | Cone7ag1860 | 442456 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone7ag1860 | 337 | Pfam | Domain of unknown function (DUF702) | 115 | 266 | - | - | |
Cone7ag1860 | 337 | NCBIfam | putative zinc finger domain, LRP1 type | 117 | 159 | IPR006510 | - | |
Cone7ag1860 | 337 | Coils | Coil | 159 | 179 | - | - | |
Cone7ag1860 | 337 | NCBIfam | LRP1 C-terminal domain | 217 | 264 | IPR006511 | - | |
Cone7ag1860 | 337 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 13 | 331 | IPR007818 | GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone12ag1177 | Cone-Chr12:9305921 | Cone7ag1860 | Cone-Chr7:12025045 | 2.19E-23 | dispersed | |
Cone12ag1176 | Cone-Chr12:9305353 | Cone7ag1860 | Cone-Chr7:12025045 | 1.97E-10 | wgd | |
Cone17ag1376 | Cone-Chr17:9557174 | Cone7ag1860 | Cone-Chr7:12025045 | 5.70E-76 | wgd | |
Cone20ag0106 | Cone-Chr20:478496 | Cone7ag1860 | Cone-Chr7:12025045 | 2.98E-78 | wgd | |
Cone4ag1946 | Cone-Chr4:13719543 | Cone7ag1860 | Cone-Chr7:12025045 | 1.05E-175 | wgd | |
Cone6ag1659 | Cone-Chr6:12647671 | Cone7ag1860 | Cone-Chr7:12025045 | 2.99E-58 | wgd | |
Cone7ag1860 | Cone-Chr7:12025045 | Cone8ag1222 | Cone-Chr8:10333267 | 1.29E-32 | wgd | |
Cone7ag1860 | Cone-Chr7:12025045 | Cone8ag0832 | Cone-Chr8:8313349 | 7.45E-49 | wgd | |
Cone7ag1860 | Cone-Chr7:12025045 | Cone9ag1584 | Cone-Chr9:11367151 | 5.37E-52 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46603 | PF02362 | B3 | 1.10E-14 | CL0405 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone7ag1860 | K27807 | - | csv:101213154 | 349.747 |