Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1869 ATGGATGATGGTGGACATCATGAAAACGGAAGGCACAAAGCAGATCAATTTAAATCAGCCCAGAGTCAGTGGTTGATGCATCAGCCATCAATGAAGCAGATAATGGCTATTATGGCCGAAAGAGATGCGGCCATTCAGGAAAGAAATCTGGCTCTTTCTGAGAAAAAGGCAGCCCTTGCGGAGAGGGACATGGCGATCCTTCAGCGAGATACAGCAATTGCAGAAAGGAATAACGCCATAGTGGAACGAGACAATGCTATTGCTACTCTCCAGTACCGTGAAAACTCTTTAACAAGTGGTAATATGTCATCTTGCCCACCAGGTTGCCAAATTGCCCGTGGAGTGAAGCATATGCACCACCATCACCAGCAACATGGTCACCATTTACCCCACCTAAACGAATCTACTTACAGTACAAGGGAAATTCACCCAAATGATGATGTCCCTATATCACCTAATGCTTCTGAGACTGTAAAATCGAGGAGGGGAAAGCGAAGTAACGAAGCCAAAGGAATCTCACCAAGTAAAAAGGCATCCACACCTCGGAGGAAGGTTAAGATGGAGGGAGAAGACCTGAACAAGATGATGTTTGGCAAGTCACATGAATGGAGGGGTTCTGGGCAAGATATTGGAGCTGGGGGTGATGATCTCAACAAACAGTTGGCAGCATCGAAATCTGATTGGAAGGGGCAAGATTTGGGACTGAACCAGGTGGCATTTGATGAGTCGACAATGCCAGCACCAGTATGTTCTTGCACTGGAATTTTAAGGCAATGCTATAAATGGGGAAATGGAGGGTGGCAGTCTGCTTGCTGTACCACCACAATATCCATGTATCCATTACCAGCAGTTCCTAATAAACGGCATGCTCGGGTGGGTGGTCGGAAAATGAGTGGAAGTGCTTTTAACAAGCTGATCAGCCGACTTGCAGCAGAGGGCCATGATCTGTCAAACCCAGTTGATCTCAAGGATAATTGGGCAAAACATGGAACAAATCGTTACATCACAATCAAGTAA 1017 46.02 MDDGGHHENGRHKADQFKSAQSQWLMHQPSMKQIMAIMAERDAAIQERNLALSEKKAALAERDMAILQRDTAIAERNNAIVERDNAIATLQYRENSLTSGNMSSCPPGCQIARGVKHMHHHHQQHGHHLPHLNESTYSTREIHPNDDVPISPNASETVKSRRGKRSNEAKGISPSKKASTPRRKVKMEGEDLNKMMFGKSHEWRGSGQDIGAGGDDLNKQLAASKSDWKGQDLGLNQVAFDESTMPAPVCSCTGILRQCYKWGNGGWQSACCTTTISMYPLPAVPNKRHARVGGRKMSGSAFNKLISRLAAEGHDLSNPVDLKDNWAKHGTNRYITIK 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12059704 12060847 + Conep07aG0192400.1 Cone7ag1869 442465

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1869 338 PANTHER - 21 338 IPR010409 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009723(PANTHER)|GO:0043565(PANTHER)
Cone7ag1869 338 MobiDBLite consensus disorder prediction 1 15 - -
Cone7ag1869 338 Coils Coil 50 70 - -
Cone7ag1869 338 MobiDBLite consensus disorder prediction 139 189 - -
Cone7ag1869 338 MobiDBLite consensus disorder prediction 1 22 - -
Cone7ag1869 338 SMART GAGA_bind_2 1 338 IPR010409 -
Cone7ag1869 338 Pfam GAGA binding protein-like family 1 338 IPR010409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1869 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0717 Cone-Chr13:6966916 Cone7ag1869 Cone-Chr7:12059704 6.63E-42 dispersed
Cone19ag0717 Cone-Chr19:5929168 Cone7ag1869 Cone-Chr7:12059704 2.43E-39 dispersed
Cone12ag1196 Cone-Chr12:9401432 Cone7ag1869 Cone-Chr7:12059704 2.29E-63 wgd
Cone4ag1956 Cone-Chr4:13769816 Cone7ag1869 Cone-Chr7:12059704 2.59E-170 wgd
Cone7ag1869 Cone-Chr7:12059704 Cone8ag1244 Cone-Chr8:10422942 1.44E-65 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1061 . . . . . . . . . . . . . . . . . Bhi04g00240 . . . Hepe10g0135 . . Cla08g01437 Cam08g1917 Cec08g1493 . . . Cre08g1393 Cone4ag1956 Cone7ag1869 . . . . . Cme03g01896 . Blo18g00782 . . . . Bma01g00731 . . . . Cma12g00420 . . Car15g00648 . . . . . . . . . . . . . . . . Lsi08g01338 . Chy03g01399 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone19ag0717 . 1 290 BBR/BPC Transcription factor family AT2G01930 58.9 8.1e-87 317.8
Cone13ag0717 . 1 289 BBR/BPC Transcription factor family AT2G01930 56.3 6.7e-81 298.1
Cone19ag0717 . 177 290 BBR/BPC Transcription factor family AT2G35550 62.3 7.0e-41 164.9
Cone13ag0717 . 176 289 BBR/BPC Transcription factor family AT2G35550 62.3 2.0e-40 163.3
Cone7ag1869 . 232 338 BBR/BPC Transcription factor family AT1G68120 57.0 4.3e-37 152.5
Cone8ag1244 . 1 305 BBR/BPC Transcription factor family AT2G21240 63.8 1.6e-80 297.0
Cone12ag1196 . 1 305 BBR/BPC Transcription factor family AT2G21240 61.4 1.6e-77 287.0
Cone7ag1869 . 1 338 BBR/BPC Transcription factor family AT2G21240 50.6 1.4e-57 220.7
Cone8ag1244 . 1 305 BBR/BPC Transcription factor family AT4G38910 61.3 2.0e-69 260.0
Cone12ag1196 . 1 305 BBR/BPC Transcription factor family AT4G38910 60.0 1.6e-66 250.4
Cone7ag1869 . 90 338 BBR/BPC Transcription factor family AT5G42520 62.6 1.5e-77 287.0
Cone4ag1956 . 87 338 BBR/BPC Transcription factor family AT5G42520 60.0 1.5e-72 270.4
Cone12ag1196 . 192 305 BBR/BPC Transcription factor family AT5G42520 75.0 8.7e-49 191.4
Cone19ag0717 . 177 290 BBR/BPC Transcription factor family AT2G35550 62.3 7.0e-41 164.9
Cone13ag0717 . 176 289 BBR/BPC Transcription factor family AT2G35550 62.3 2.0e-40 163.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004398 3 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46605 PF01926 MMR_HSR1 3.10E-21 CL0023 Cone TF