Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1873 ATGGGCTCTGTTTCTCTGAAAATCGGAGATGGAACCGCCAGATTCAAGAGAGCATCATTCTGTTCTTCAGCTTTAAACGTTCTCATGCTCCTCTCTGTTATCACCACCAATCTCTTCGCTCTCTACGCCTTCACCTCCTCCCCAAAAAACCACCAAGTTCACATACTTCACCAGCACCACAAGAACATCTCTCTGATCTCCGAGCAGGTCTCTCTCATCCTCAGAGAGATTGATTCCTCTCAGAAAAAACTTTCCCAGATGGAGAAAGAGCTGCTCGGCTATGAAACTATCGATCTTTCCCGATCCAATGTTGCAAGCGAGCTCAAATTCTTTCTCCAGCACCATCAACTCCCTCTAGGTAAGGATTCAAGAAGCGGGATCACTGAAATGGTAGCATCTGTAGGTCATTCTTGTGAGAAGTCAATGGACATTCTTTATCAGTTTATGAATTACAAGGTCTCCGGACCTTGTCCTGACGATTGGAGTCTTGGCCAGAAACTGATTTTTCGAGGATGCGAGCCTTTGCCCAGGAGGAGATGCTTAACTAAAACTGTTCCTAAGGTGGGTCTTCAATCTTTCCCTTTTTCTCTTTGGAACCCTGTTAGTGACAAGATTGTTACTTGGAGTGGACTTGGATGTAAGAATTTTAAGTGCTTAAATAGTAAGAAACTGAGTAAGGATTGTATTGGTTGCTTTGATTTGGTTAATGGGAGTGAGCCTCAAAGGTTTATCAAGGCTAAAGGGAAGAATGATTTTCTTATTGATGATGTATTAGCTTTGAATAGTAATGGTGGAATCAGAATAGGGTTTGATATAGGAGGTGGGTCTGGTTCTTTTGCTGCTAGAATGGCAGAGAGGAATGTCACTGTTATTACCAACACTTTGAATATCGATGCCCCATTTAGTGAATTCATTGCTGTAAGAGGGCTTTTCCCTCTTTACATGAGTTTAGATCATAGGTTTCCTATCTATGACAATGTCTTTGATTTGGTTCATGCTGGGAGTGGATTGGATGTTGGGGGGAAACCCGAGAAATTGGAGTTTCTGCTGTTTGATATCGATCGGGTTTTGAGGGCAGGGGGTTTGTTTTGGTTGGATAACCTTCATTGCAATAATGATGACAAGAAGAATGCCTTAACGAGGTTGATTGAACGGTTTGGATATAAGAAGCTTAAATGGGTTGTTGGGGAGAAGGTTGATGCGGGTAAACCCGAGGTTTATTTGTCTGCTGTTCTACAGAAGCCTGTAAGAGTATGA 1257 42.48 MGSVSLKIGDGTARFKRASFCSSALNVLMLLSVITTNLFALYAFTSSPKNHQVHILHQHHKNISLISEQVSLILREIDSSQKKLSQMEKELLGYETIDLSRSNVASELKFFLQHHQLPLGKDSRSGITEMVASVGHSCEKSMDILYQFMNYKVSGPCPDDWSLGQKLIFRGCEPLPRRRCLTKTVPKVGLQSFPFSLWNPVSDKIVTWSGLGCKNFKCLNSKKLSKDCIGCFDLVNGSEPQRFIKAKGKNDFLIDDVLALNSNGGIRIGFDIGGGSGSFAARMAERNVTVITNTLNIDAPFSEFIAVRGLFPLYMSLDHRFPIYDNVFDLVHAGSGLDVGGKPEKLEFLLFDIDRVLRAGGLFWLDNLHCNNDDKKNALTRLIERFGYKKLKWVVGEKVDAGKPEVYLSAVLQKPVRV 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12071527 12073169 + Conep07aG0192800.1 Cone7ag1873 442469

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1873 418 Coils Coil 70 90 - -
Cone7ag1873 418 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN-RELATED 10 417 IPR053223 -
Cone7ag1873 418 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 253 389 IPR029063 -
Cone7ag1873 418 Gene3D Vaccinia Virus protein VP39 241 401 IPR029063 -
Cone7ag1873 418 Coils Coil 365 385 - -
Cone7ag1873 418 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 259 390 IPR004159 GO:0008168(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1873 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0035 Cone-Chr5:206029 Cone7ag1873 Cone-Chr7:12071527 1.29E-76 dispersed
Cone6ag0910 Cone-Chr6:4669796 Cone7ag1873 Cone-Chr7:12071527 4.94E-65 dispersed
Cone7ag1873 Cone-Chr7:12071527 Cone9ag0916 Cone-Chr9:4505740 1.56E-66 dispersed
Cone4ag1960 Cone-Chr4:13780825 Cone7ag1873 Cone-Chr7:12071527 8.05E-293 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1077 . . . Bda03g00280 . Bpe04g00236 Bma04g00237 . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1960 Cone7ag1873 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009763 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 2 1 1 1 1 1 33