Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1874 ATGAAGTTGCTCAAAGAGATGCAGGATCACTCTGTAGCTCGGAAGGCTATGAATTCAGAGTTATGGCATGCCTGTGCCGGCCCTCTCGTTTCTCTGCCTCAAGCTGGCACTCTTGTTTATTACTTCCCACAAGGACATAGCGAACAGGTGGCAGTTTCCACTAAAAGAACAGCAACCACACAGATTCCAAACTATCCAAATCTTCCTTCTCAGCTCCTGTGCCAAGTCCAAAATGTTACTCTCCATGCAGACAAAGATACAGATGAAATTTATGCACAAATGAGTCTCCAGCCAGTGAACTCTGAAAATGATGTGTTAAGATTACCGGACTTTGGACAAAGGGCTAGCAAACATCCGATCGAATTCTTCTGCAAAACTTTGACTGCAAGTGATACTAGCACTCATGGTGGATTCTCTGTTCCACGCAGGGCAGCCGAAAAACTGTTTCCTCTCTTGGATTATGCAATGCAACCACCTACTCAAGAATTAGTAGTCCGTGATTTGCATGACAATACCTGGACTTTTCGCCACATATATCGCGGGCAGCCAAAAAGGCATCTTCTCACAACTGGATGGAGCTTATTTGTTGGTGCAAAACGTCTTAGGGCTGGTGATTCTGTTCTTTTTATCAGGGATGAGAAGTCGCAGTTACTGGTTGGAGTGAGGCGTGCTACCCGTCAACAAACAACACTACCATCGTCAGTTCTGTCTGCAGATAGTATGCATATTGGCGTTCTTGCTGCTGCCGCCCATGCTGCAGCAAATAGGAGCCCGTTCACCATCTTCTACAATCCAAGGGCATGTCCTTCAGAGTTTGTGATTCCTTTAATGAAATACCGAAAGTCAGTGTATGGGACCCAACTTTCTGTAGGGATGAGGTTTGGAATGATGTTTGAAACAGAGGAATCTGGTAAACGCAGATACATGGGAACTGTAGTTGGTATTAGTGACTTAGATCCACTTAGATGGCCTGGTTCCAAGTGGCAAAATCTTCAGGTAGAATGGGATGAACCAGGATGCTGCGATAAACAAAACAGGGTTAGCTCATGGGACATTGAAACTCCGGAAAGTCTTTTCATTTTTCCTTCTTTGACTTCGGGTCTTAAACGACCGTTCCAATCTGGATTTTTAGGAGGAGAAACTGACTGGGGTAGTTTGATAAAAAGGCCACTTGTTCGGATCCCCGAAAATGGACATGCTGATCTTCCATATTCCGTTTCTAATCTATGTTCTGAACAATTGATGAAGATGCTGATGAAACCTCAACTTGTTAACCACCATGTACCTACTGCCTTATATCAAGAAACCACTGATAAGGTAGATAAGCCACAAGATGTGAAGATCTTACAGCCTGCAATCAATCAAAAGCCTCAGTTGATATATTCAGAAATGACATCATCTATGCAAGATCAAAAACTTCCACGTTCACTTCCCAATCAATCTGATGCTACGGATGCAAACAACTCATCATTGGTAACAACCTCACTCAGAAAATCAAACTATTTCTCTATCCCTCATGAAAGCCAAGCACTATCTGGCATCAACCATGAGAACTCAAAATTCGAACCTGAGATTTCTTCAGATCCATTAAGCCATATGACCCCAACTAGAGAATGCAGCGAGGAAAAACTCAACTCTGCAAATGTAAATCTCCATAATCTTGTTAACCAGCTTTCATTCCTCAATCAAAACCAGACTCCCTTGCCAATGCAAGAAAATCCATGGCCTATCATTCAACCTCAGCTTGAATCATTGCTTCACCCCCTCCAATCAATTGACATGCCTCAATCAGATTTCACAAACCCCAGTGGATTACTTCCAACCCTAGATGCAGATCATGGTGGTATATATAACCCTGTAGGAGTACATCCAGACACAGTGAATTTCCCGATGGCTGCTTCAACTAATCCTGAAATATGGGATCCTGTTAACAATTTAAGGTTCTTTTCTCAAGGAAACCAGCACTCTTCTTTCTCCCATCAGGACCCCTCATCTAAAAACCTTAATTGTAATATAGCTAATTTGAATGATCAGAGAGACTTGTCAGATGAGAGCAATAACAATAATCAAAGTGGGATTAGTTCGTGCCCTAATATGGGTCTAAATAATGGTAGTGGGAATAGCATGTTTGATCCATCTGTTCCAAGTGCTGTTTTTGATGAATATTGCACGTTGAAAGCTGTTGATTTTCAGAACGTACCTGATTACTTGGTGGGCAACTTCAGTTCAAGCCAGGATGTTCAGTCTCAGATTACTTGTGTGAGTCTAGGAGATTCACAGGCTTTTTCTCGGCAAGATTTTGGAGACAACTCCAATGGAACAAGTTCAAGTAATGCTGACTTTGATGAGAGCAGTCTTTTGCAGAGTAGCTCTTGGAAGCAGCAAGTAGTTCCCCCACCTATGAGAACTTATACAAAGGTTCAGAAGGCAGGATCTGTTGGGAGATCAATTGATGTGACGAGTTTCAAGAACTACGATCAATTATGCTCTGCAATTGAATGCATGTTTGGTCTTGAGGGGTTGCTCAATGACCCAAGAGGTTCAGAATGGAAGCTGGTCTATGTGGATTATGAAAATGATGTTCTACTTGTTGGAGATGACCCTTGGGAGGAGTTTGTGGGTTGTGTCCGATGCATTAGGATCTTATCACCTTCAGAAGTTCAGCAGATGAGTGAAGAGGGAATGAAACTTCTTAACAGTGCTATGATGCAAGGAATCAATTGCTCCGCTACAGAAGGTGGCCGTGCCTGA 2751 42.71 MKLLKEMQDHSVARKAMNSELWHACAGPLVSLPQAGTLVYYFPQGHSEQVAVSTKRTATTQIPNYPNLPSQLLCQVQNVTLHADKDTDEIYAQMSLQPVNSENDVLRLPDFGQRASKHPIEFFCKTLTASDTSTHGGFSVPRRAAEKLFPLLDYAMQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFIRDEKSQLLVGVRRATRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLMKYRKSVYGTQLSVGMRFGMMFETEESGKRRYMGTVVGISDLDPLRWPGSKWQNLQVEWDEPGCCDKQNRVSSWDIETPESLFIFPSLTSGLKRPFQSGFLGGETDWGSLIKRPLVRIPENGHADLPYSVSNLCSEQLMKMLMKPQLVNHHVPTALYQETTDKVDKPQDVKILQPAINQKPQLIYSEMTSSMQDQKLPRSLPNQSDATDANNSSLVTTSLRKSNYFSIPHESQALSGINHENSKFEPEISSDPLSHMTPTRECSEEKLNSANVNLHNLVNQLSFLNQNQTPLPMQENPWPIIQPQLESLLHPLQSIDMPQSDFTNPSGLLPTLDADHGGIYNPVGVHPDTVNFPMAASTNPEIWDPVNNLRFFSQGNQHSSFSHQDPSSKNLNCNIANLNDQRDLSDESNNNNQSGISSCPNMGLNNGSGNSMFDPSVPSAVFDEYCTLKAVDFQNVPDYLVGNFSSSQDVQSQITCVSLGDSQAFSRQDFGDNSNGTSSSNADFDESSLLQSSSWKQQVVPPPMRTYTKVQKAGSVGRSIDVTSFKNYDQLCSAIECMFGLEGLLNDPRGSEWKLVYVDYENDVLLVGDDPWEEFVGCVRCIRILSPSEVQQMSEEGMKLLNSAMMQGINCSATEGGRA 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12073372 12078143 - Conep07aG0192900.1 Cone7ag1874 442470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1874 916 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 894 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone7ag1874 916 SMART B3_2 123 225 IPR003340 GO:0003677(InterPro)
Cone7ag1874 916 Gene3D - 287 359 - -
Cone7ag1874 916 Gene3D - 120 225 IPR015300 -
Cone7ag1874 916 CDD B3_DNA 122 223 IPR003340 GO:0003677(InterPro)
Cone7ag1874 916 FunFam Auxin response factor 287 359 - -
Cone7ag1874 916 SUPERFAMILY CAD & PB1 domains 815 881 - -
Cone7ag1874 916 Pfam Auxin response factor 249 332 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone7ag1874 916 Gene3D - 799 891 - -
Cone7ag1874 916 ProSiteProfiles B3 DNA-binding domain profile. 123 225 IPR003340 GO:0003677(InterPro)
Cone7ag1874 916 MobiDBLite consensus disorder prediction 678 700 - -
Cone7ag1874 916 ProSiteProfiles PB1 domain profile. 802 886 IPR053793 -
Cone7ag1874 916 MobiDBLite consensus disorder prediction 465 490 - -
Cone7ag1874 916 Pfam AUX/IAA family 800 890 IPR033389 -
Cone7ag1874 916 Pfam B3 DNA binding domain 123 224 IPR003340 GO:0003677(InterPro)
Cone7ag1874 916 SUPERFAMILY DNA-binding pseudobarrel domain 109 252 IPR015300 -
Cone7ag1874 916 Coils Coil 537 564 - -
Cone7ag1874 916 FunFam Auxin response factor 121 225 - -
Cone7ag1874 916 FunFam Auxin response factor 798 891 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1959 Cone-Chr4:13780687 Cone7ag1874 Cone-Chr7:12073372 0 dispersed
Cone6ag0263 Cone-Chr6:1210550 Cone7ag1874 Cone-Chr7:12073372 7.61E-187 dispersed
Cone7ag0776 Cone-Chr7:4949876 Cone7ag1874 Cone-Chr7:12073372 2.36E-191 dispersed
Cone7ag1874 Cone-Chr7:12073372 Cone9ag0298 Cone-Chr9:1285154 1.69E-187 dispersed
Cone7ag1874 Cone-Chr7:12073372 Cone16ag0327 Cone-Chr16:4148175 7.63E-203 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46606 PF05670 NFACT-R_1 2.70E-44 CL0684 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1874 K14486 - csv:101216825 1284.24