Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1884 ATGTCGATCGCCGTTTCGTCACCGGCCGTCGGATCATCGTTCTCTCTCGCACGATCTCGGAGAGGGATGCCTAGGTTTAGTATGGTCGTCCGATCGAGTGCGACCTCTGTTGCCTCGATCTTGACCAAATTTCAGAACGAGTGTGCTACTCCTTTGCCAGTACTACGGCACGTGGCTGATTCCATGGCCGCTGATATGCGTGCTGGGCTCGCCGTTGACGGTGGTAGCGACCTTAAAATGATTCTCAGTTATGTCAATAGCCTTCCAACTGGGAACGAGAAAGGATTATTCTATGCGTTGGATCTAGGTGGCACCAATTTCCGGGTGCTTAGAGTCCAACTGGGTGGCAAGGAAGAGCGCGTAATTGCCACCGAGTTCGATCAAATGTCGATCCCGCAAGAACTAATGTCCGAAACCTCCGAGGATCTCTTTGATTTTATTGCTTCTGGGCTGGCAAAATTTGCTGCGAAAGAAGGTGAAATGTTTCACTTCCCTCCTGGAAGGAAAAGGGAGATTGGTTTCACTTTTTCATTCCCTGTGAAACAAACTTCAATCGATTCTGGCATACTGATCAAGTGGACTAAGGGCTTTAACGTCTCCGGAACGGCGGGAAGAGATGTAGTTGCTTGTCTGAAGGAGGCTATGGAAAGGCAAGGAGTAGATATGAAGGTGTCTGCCTTGGTTAATGACGCGGTGGGAACCTTAGCTGGAGCACGATACTATGACAATGATGTCGTGGCTGCTGTCATTTTGGGTACTGGCACAAATGCTTGCTACCTAGAAAGGATCAATGCTATTCCTAAACTTCAAGGATCCTCTGCATCTCCTTCTTCGTCCAGAACGATTATTAGTACCGAGTGGGGAGCGTTCTCAAATGGTCTTCCTCTAACTGTGTTTGATAGAGATATGGATGCTGCTAGTATCAACCCGGGTGAGCAGATATTTGAAAAGACTATCTCTGGTATGTATCTGGGTGAAATAGCCCGTCGTGTGCTTTTGATGCTAGCAGAAACCAGTGCTTTATTTGGGAACTCTGTCCCACATAAATTATCAACACCTTTCATACTCAGAACTCCAGATCTATGCGCCATTCAGCAAGACACTACCGATGACCTTCAAATTGTTGGTACAATCTTACACAATGTAGCCAGGGTGGAGTCGAATTTAAGTGAAAGGAAGATAGTGACAGAGGTTTGTGATGTAATTGCAAAGAGAGGTGGGCGATTAGCAGGGGCCGGGATAGTGGGAATTCTGCAGAAGATGGAGGAGGACTCTAAAGGTTCTGTGTTCGGGAAAAGGTCGGTGGTGGCTATGGATGGAGGATTATATGAGAATTATCCACAGTTTAGAAGATATCTAAAAGATGCTGTCACCGATCTCCTCGGAACGGAATCAGCAAAGAATGTGGTTATTGAGCATACTAAGGATGGCTCCGGCATTGGTGCTGCTCTTTTGGCTGCTGCAAATTCTATGTATCCACATGATTAA 1488 46.77 MSIAVSSPAVGSSFSLARSRRGMPRFSMVVRSSATSVASILTKFQNECATPLPVLRHVADSMAADMRAGLAVDGGSDLKMILSYVNSLPTGNEKGLFYALDLGGTNFRVLRVQLGGKEERVIATEFDQMSIPQELMSETSEDLFDFIASGLAKFAAKEGEMFHFPPGRKREIGFTFSFPVKQTSIDSGILIKWTKGFNVSGTAGRDVVACLKEAMERQGVDMKVSALVNDAVGTLAGARYYDNDVVAAVILGTGTNACYLERINAIPKLQGSSASPSSSRTIISTEWGAFSNGLPLTVFDRDMDAASINPGEQIFEKTISGMYLGEIARRVLLMLAETSALFGNSVPHKLSTPFILRTPDLCAIQQDTTDDLQIVGTILHNVARVESNLSERKIVTEVCDVIAKRGGRLAGAGIVGILQKMEEDSKGSVFGKRSVVAMDGGLYENYPQFRRYLKDAVTDLLGTESAKNVVIEHTKDGSGIGAALLAAANSMYPHD 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12132256 12134446 + Conep07aG0193900.1 Cone7ag1884 442480

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1884 495 SUPERFAMILY Actin-like ATPase domain 244 488 IPR043129 -
Cone7ag1884 495 ProSitePatterns Hexokinase domain signature. 172 197 IPR019807 GO:0005524(InterPro)|GO:0006096(InterPro)
Cone7ag1884 495 PANTHER HEXOKINASE 32 490 IPR001312 GO:0001678(PANTHER)|GO:0001678(InterPro)|GO:0004340(PANTHER)|GO:0004396(InterPro)|GO:0005524(InterPro)|GO:0005536(InterPro)|GO:0005739(PANTHER)|GO:0005829(PANTHER)|GO:0005975(InterPro)|GO:0006006(PANTHER)|GO:0006096(PANTHER)|GO:0008865(PANTHER)|GO:0046835(PANTHER)|GO:0051156(PANTHER)
Cone7ag1884 495 Pfam Hexokinase 41 240 IPR022672 GO:0005524(InterPro)|GO:0005975(InterPro)|GO:0016773(InterPro)
Cone7ag1884 495 Gene3D - 61 475 - -
Cone7ag1884 495 FunFam Phosphotransferase 83 251 - -
Cone7ag1884 495 Gene3D - 83 486 - -
Cone7ag1884 495 CDD NBD_sugar-kinase_HSP70_actin 99 261 - -
Cone7ag1884 495 PRINTS Hexokinase family signature 224 240 - -
Cone7ag1884 495 PRINTS Hexokinase family signature 395 417 - -
Cone7ag1884 495 PRINTS Hexokinase family signature 313 335 - -
Cone7ag1884 495 PRINTS Hexokinase family signature 172 197 - -
Cone7ag1884 495 PRINTS Hexokinase family signature 98 114 - -
Cone7ag1884 495 PRINTS Hexokinase family signature 247 261 - -
Cone7ag1884 495 PRINTS Hexokinase family signature 472 488 - -
Cone7ag1884 495 Pfam Hexokinase 247 487 IPR022673 GO:0005524(InterPro)|GO:0005975(InterPro)|GO:0016773(InterPro)
Cone7ag1884 495 SUPERFAMILY Actin-like ATPase domain 27 242 IPR043129 -
Cone7ag1884 495 ProSiteProfiles Hexokinase domain profile. 35 487 IPR001312 GO:0001678(InterPro)|GO:0004396(InterPro)|GO:0005524(InterPro)|GO:0005536(InterPro)|GO:0005975(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1884 K00844 - - rcu:8274653 756.518
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0764 Cone-Chr4:4335412 Cone7ag1884 Cone-Chr7:12132256 1.09E-188 dispersed
Cone4ag0963 Cone-Chr4:8229089 Cone7ag1884 Cone-Chr7:12132256 3.83E-187 dispersed
Cone7ag1884 Cone-Chr7:12132256 Cone7ag1169 Cone-Chr7:8724766 7.85E-192 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1105 . Blo12g00884 . . . Bpe04g00247 Bma04g00247 . . . . Cma09g00105 . . . Cpe06g00068 . . . . . . . . . . . . . . . . Cone7ag1884 . . Lsi04g01742 Csa03g04277 Chy04g00420 . . . . . . . . . Sed13g1574 . Cmo09g00101 . . . Car09g00095 . . Bhi09g02092 Tan01g5013 Cmetu04g2766 . Hepe01g1686 Mch11g0120 . Cla05g01871 Cam05g2002 Cec05g2014 Cco05g2072 Clacu05g1994 Cmu05g1875 Cre05g1999 . . . Cme04g00472
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012601 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 2 1 1 29