Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1892 ATGGCTGGAAACTATAGATTTGCGATGGACCAAAAGGATATTGTCAGGTTATTAGTTACCACCATTGATGGTTTCATAAGAGATCGTTTAACCAATAAAGAACAGAGAACGCAGCACAAAGAACAGTGTGCAGAGAGACTCGCAGCTGAAGATGGAAGCTCCAACAAGGAATCGGTAGTTAGGTACTCTGATCAAGCTGTATTAGCAAATTTGGATTGGGGTATTGAAGCCCTAGAGGAAGCTATCAACACATCCAATATAGAAACTAAGCTTGCACGATTAGACCACGCCGAGAAGATGCTACAAGTTTGTGCATTGTTGAATTCAAATGACAAAACTGCTGGTGTTCCCAATTTCTACCTCTCTGCGTGGGCCCATCTCAATCTCTCATACTTGTCGAAATTGAGGGGAAATGTTCATAACTCAGTTCTTCATGTTATTGAGATGTTTAGTATCGACCCTTTCTTTTCTAGGATTGATTTTGCCCCTGAAATTTGGAAAGAACTTTTTCTACCACACATGGCGTCTATTGTGGGATGGTATTCGGAGGCGAGGCATAGGCTTGTGATGGAAGTAATACCCGATTCGTTTGATTTATCTTTCACAGCTGATTTAGACCAATTCTTCAATGAGTCTTTGATCTTCTCAATGAGTCCAGATCAAGTGGAGAGACTGCAAAATCTGGAGAAGCTTTATGGAGCATCATTGGATGAGAACACCAGGCTTTATGCTAAATACTTCAGGGATTGCATGAACTTTCCTGAATCACCTTCTACAAAGAAGATTATTCCGATGTTGCCAATTGCAGAGCCACCGATGACTCCTCTTCATGAAGTGAGCCACTCAATCCCTGATTATGTGAAATTCGGACCTATCTTGCCAAAAAGTGCTGGATTTTCTCCAGTTCTAAAATCCAAAGATGGTGCAAAAGAAGCAAGCAGAGTGAACTCTATTTCTGCTCCACCACAGAATGCGGCCAAGTTTACTGGGTGGGATTCTAAGGATCAGCATGATTCAGATTATGAGCCTAATGATTCTTGCGTGGATTTATCACCTAGCAGCATGAGGATAATGGAGGAAGAAGATGCTGGGTCTAAAGTAGAGATTCCTAATATAAAGTATCGTGTGCTTTCCCCCCCAATATTTTCTCCAATGGATTCCCCTTCAACTCCTTCACCAAAGAATTTGTCCCCGAAACCAGACATGGACAGTAAAAAGGAATCCGCATCAGCATTGCGCTTATTTTCCAGCCGGATCACAGATCTACATATTTCAACCTCTTTTCCTGGATCTCCACGCTCAAAGAGTGATTGCAGCATTAGTCCAGCAGACTCTTATAATGAAGTAATTGAGGTAAAGAAAATTCACAGTAAAAGCTATAATCTATCTCGAAGTATGAGCTATGAAGATTTGAATAGCCAACTTTTGGAAAATAGTTCACCCAGAGAACATGAAGAGGGAAGCCAGAGCCAGAGTTCACTGTCATCGTCTGAGAACCTGAATCATCAGTCACGACCACCTAAGGATTTTGTCTGTCCTATAACAGGCCAGCTTTTTAGTGACCCTGTTACCCTTGAAACGGGTCAGACCTATGAAAGAAAAGCGATTCAGGAATGGCTGAAAAGAGGAAACACAACTTGCCCCATTACACGGCAGCCTTTGGCCTCAAACATGTTGCCTAAAACAAACTATGTCTTGAAGAGATTAATATCATCTTGGAAAGATCAGCATCCTGATTTTGTTCAAGATTGTTCAAACGCTGGAACACCTATAAATTCATTTTGTTCTCCTGGCACAAAAGAAAGCCCTTCGGACTGCACTCCTCATAGATCATATGGTCTCTCAATTCTTAACAACACATATGAGCATGTTAACCAAAGAAGCAAAAGATTTACACAGGCAGCTGTTTTAACATCGCCAACCAGTGTAATATCTCAAGCCACAGCTGAAACAATTATTAATGGACTGAAACCTTTTGTGTCATGTCTTTGTGCTTCACAAAACCTGCAAGAATGTGAAACAGCTGTGTTAGCAATAGCTAGAGCGTGGAAGGACTCCAAGGCTGATCCAGGGGTTAGATCTTATTTATCAGAACCCACAATTGTAAATGGCTTTGTAGAAATACTCTCAGCTTCAATCGATAGAGAAGTGCTCAGAACAACACTATACATTCTCTCTGAGCTAATATTTGCAGATGAAAATGTCGGAGAATTTCTTACCAGTGTAGATTCTGATTTTGATTGCCTGGCTACTCTAGTAAAGAATGGTCTAGCAGAGGCTGCTATTCTTCTATGCCAGATGAAGCCTGTGTTTGCTCAGCTTTCAGATCATGACCTCATACCGTCTCTCGTCCAAATAATCCTTAACAAAAATGAAGATTCAGATGATCCTCAATTTGTAATGGAACCAAAGGAGGCTGCTATTGCAATGCTTGAGCAGATTTTAATTGGAGGAGATGAAAACAGCAGGTCCCTTAATGCTTTAGGAGTTATTTCTTCAAATGGGATTCCTGCTTTGCTCAAGTGTTTGAATGGGGTTGATCTAAGGAGGTCCATTGTATCCATACTCCTATGTTGTATGCAGGCAGAAAGAAGTTGCAGGAACCTAATAGCAAATAGAGTTGAACTAACCCCTGTTCTCGAGTTATTTCATGCTGGAAATGATAGTGAAAGAGGCGTCTGTGTACATTTCCTTTCGGAGCTGGTCCTGTTGAACAGGAGGACATTATGCAACCAGATCTTGCAGATAATCAAAGATGAAGGTGCCTTCAGCACCATGCATACACTTCTTGTTTATCTGCAAATGGCTCCAATTGAGCAGCGACCTGCAATCTCTTCTCTTCTTCTGCAGCTTGATCTCCTGACTGAGCCGCGGAAGATGAGCATCTACCGGGAAGAAGCTTTGGACTCTCTAATCGAATCTCTTCGGAGAAGGGACTTCTCTTGTTCCCAGTCAGTAGCTTTGGATGCATTGTTGTCTCTCACTGGGCGCTTGACTTATTCTGGAAAGTCCTACACTGAAGCCTGGTTACTCAAGATTGCAGGGTTTGATCAACCGTACAATGCTTTGATGAAAGCAGAAAGAATAAGAAAACTCGATGATGAGTTAACAGAGACCATGGAGGAGGAAGAAAAAGCCACAAGAGCCTGGGAGAAAAGGGTAGCTTTAGTTATTTGCAGCCATGAAAAGGGCTCTATATTCAAAGTCTTGGAGGAGTGTCTAAAGAGTAATTCTGTAGAGATAGTGAAGTCTTGCCTTGTCATTGTCACATGGCTTTGCCACATGCTTTCTTCCCTTCCTGATACTGGCGTACGTGATACTGCTCGCAAGTCCTTGCTTGATGAATTTATTAATGTCCTCCAATCCTCCTGTAACCTTGAGGAGAAGATTTTGGCAGCCCTTGCTCTCAAAGCTTTCGTTAGCGATCAAGCTGCACTTGAAGAAATGGGGAAACACGCAAAATGCATTTGTAAGACCTTGAGAAAGCTAAAGAGAAACTCAGTGGTGGTTGGCGAAATCACAAAAGCCTTGATGAACTTGTCATCTGTCAATGCAACAGAGCTCTGGAGTTATACTGAAGTAGCGGAATTAGATTCAGGCATAAATGGAGAAGTTTTGTCCTTGATCCATCTTAAAAGTCGTCTTTTAAGCAGTCATTCTGACGGAACAATCAAGCTTTGGGATGCTGGGAAGAAAGTATTGAGGTTGATTCAAGAAGTAAATAAACACACAAAAGCTGTGACATGCCTCTGTGTCGCAGCTTCTGGCGACATATTATACAGTGGTTCCTTAGACAGAACAATTCGGGTATGGACTGTCAAACCCGATGAAATTCAGTGCATTCAAGTGCATGATGTAAAAGAGGCAGTATACGAGTTGACAGCCAATGTTAATGTGGCATGCTTTGTTACTCATGGAACCGGTGTCAACGTGTATAACTGGTCTGGGGCCGCCAAGCATATAAATTTCAACAAATATGTCAAGTGCTTAGCCCTGTCAGATGATAAACTATACTGCGGTTGCTCTGGTGATAGTATTCAGGAGGTGGATTTGTCTAAACACACATCAAACACATTCTATGCTGGTATTAGGAAATTGTTGTGGAAGCAAACTATCTACTCACTGCATATTCAAGATGGCCTTCTATTTTCTGGCGGCTCTTCTGTTGATGCAGCAGCTGGAAGGATATTTTCGATCTCAACCAAGGCAGTAGTAGGATCGTTCTCAACCGGACAAGACATCCATCGAATAGCCATGAATAGTGATTTTATATTTACAGCAACCAAATGTGGGGTCATAGAAGTTTGGTTGAAAGGAAAATACACTAAGATTGCTTCAATCAAATCGGGCAGTGGAGGAAATGCAAAGATTACATCTTTGGCAACGGATATGGATGGAGGGATGCTTTTTGCTGGTACATCTGATGCGAAAATTCAGGTTTGGGCTCTGGATTAG 4455 41.86 MAGNYRFAMDQKDIVRLLVTTIDGFIRDRLTNKEQRTQHKEQCAERLAAEDGSSNKESVVRYSDQAVLANLDWGIEALEEAINTSNIETKLARLDHAEKMLQVCALLNSNDKTAGVPNFYLSAWAHLNLSYLSKLRGNVHNSVLHVIEMFSIDPFFSRIDFAPEIWKELFLPHMASIVGWYSEARHRLVMEVIPDSFDLSFTADLDQFFNESLIFSMSPDQVERLQNLEKLYGASLDENTRLYAKYFRDCMNFPESPSTKKIIPMLPIAEPPMTPLHEVSHSIPDYVKFGPILPKSAGFSPVLKSKDGAKEASRVNSISAPPQNAAKFTGWDSKDQHDSDYEPNDSCVDLSPSSMRIMEEEDAGSKVEIPNIKYRVLSPPIFSPMDSPSTPSPKNLSPKPDMDSKKESASALRLFSSRITDLHISTSFPGSPRSKSDCSISPADSYNEVIEVKKIHSKSYNLSRSMSYEDLNSQLLENSSPREHEEGSQSQSSLSSSENLNHQSRPPKDFVCPITGQLFSDPVTLETGQTYERKAIQEWLKRGNTTCPITRQPLASNMLPKTNYVLKRLISSWKDQHPDFVQDCSNAGTPINSFCSPGTKESPSDCTPHRSYGLSILNNTYEHVNQRSKRFTQAAVLTSPTSVISQATAETIINGLKPFVSCLCASQNLQECETAVLAIARAWKDSKADPGVRSYLSEPTIVNGFVEILSASIDREVLRTTLYILSELIFADENVGEFLTSVDSDFDCLATLVKNGLAEAAILLCQMKPVFAQLSDHDLIPSLVQIILNKNEDSDDPQFVMEPKEAAIAMLEQILIGGDENSRSLNALGVISSNGIPALLKCLNGVDLRRSIVSILLCCMQAERSCRNLIANRVELTPVLELFHAGNDSERGVCVHFLSELVLLNRRTLCNQILQIIKDEGAFSTMHTLLVYLQMAPIEQRPAISSLLLQLDLLTEPRKMSIYREEALDSLIESLRRRDFSCSQSVALDALLSLTGRLTYSGKSYTEAWLLKIAGFDQPYNALMKAERIRKLDDELTETMEEEEKATRAWEKRVALVICSHEKGSIFKVLEECLKSNSVEIVKSCLVIVTWLCHMLSSLPDTGVRDTARKSLLDEFINVLQSSCNLEEKILAALALKAFVSDQAALEEMGKHAKCICKTLRKLKRNSVVVGEITKALMNLSSVNATELWSYTEVAELDSGINGEVLSLIHLKSRLLSSHSDGTIKLWDAGKKVLRLIQEVNKHTKAVTCLCVAASGDILYSGSLDRTIRVWTVKPDEIQCIQVHDVKEAVYELTANVNVACFVTHGTGVNVYNWSGAAKHINFNKYVKCLALSDDKLYCGCSGDSIQEVDLSKHTSNTFYAGIRKLLWKQTIYSLHIQDGLLFSGGSSVDAAAGRIFSISTKAVVGSFSTGQDIHRIAMNSDFIFTATKCGVIEVWLKGKYTKIASIKSGSGGNAKITSLATDMDGGMLFAGTSDAKIQVWALD 1484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12152344 12158563 - Conep07aG0194900.1 Cone7ag1892 442488

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1892 1484 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 486 586 IPR013083 -
Cone7ag1892 1484 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1240 1274 - -
Cone7ag1892 1484 Gene3D - 662 932 IPR011989 -
Cone7ag1892 1484 ProSiteProfiles Trp-Asp (WD) repeats profile. 1450 1484 IPR001680 GO:0005515(InterPro)
Cone7ag1892 1484 MobiDBLite consensus disorder prediction 316 330 - -
Cone7ag1892 1484 MobiDBLite consensus disorder prediction 477 507 - -
Cone7ag1892 1484 SUPERFAMILY WD40 repeat-like 1199 1480 IPR036322 GO:0005515(InterPro)
Cone7ag1892 1484 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 1483 IPR052858 -
Cone7ag1892 1484 SUPERFAMILY ARM repeat 655 995 IPR016024 -
Cone7ag1892 1484 Gene3D - 1295 1484 IPR015943 GO:0005515(InterPro)
Cone7ag1892 1484 SMART Ubox_2 509 573 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone7ag1892 1484 CDD RING-Ubox_PUB 507 559 IPR045210 -
Cone7ag1892 1484 SMART WD40_4 1190 1228 IPR001680 GO:0005515(InterPro)
Cone7ag1892 1484 SMART WD40_4 1440 1482 IPR001680 GO:0005515(InterPro)
Cone7ag1892 1484 SMART WD40_4 1233 1272 IPR001680 GO:0005515(InterPro)
Cone7ag1892 1484 SMART WD40_4 1401 1437 IPR001680 GO:0005515(InterPro)
Cone7ag1892 1484 Coils Coil 1026 1049 - -
Cone7ag1892 1484 SUPERFAMILY RING/U-box 497 583 - -
Cone7ag1892 1484 Gene3D - 1181 1294 IPR015943 GO:0005515(InterPro)
Cone7ag1892 1484 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1450 1484 - -
Cone7ag1892 1484 ProSiteProfiles Trp-Asp (WD) repeats profile. 1240 1274 IPR001680 GO:0005515(InterPro)
Cone7ag1892 1484 Pfam U-box domain 507 577 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone7ag1892 1484 MobiDBLite consensus disorder prediction 313 351 - -
Cone7ag1892 1484 MobiDBLite consensus disorder prediction 485 504 - -
Cone7ag1892 1484 Pfam WD domain, G-beta repeat 1236 1271 IPR001680 GO:0005515(InterPro)
Cone7ag1892 1484 ProSiteProfiles U-box domain profile. 505 580 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone7ag1892 1484 MobiDBLite consensus disorder prediction 380 410 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1892 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0731 Cone-Chr16:8435387 Cone7ag1892 Cone-Chr7:12152344 3.41E-241 dispersed
Cone18ag0129 Cone-Chr18:672248 Cone7ag1892 Cone-Chr7:12152344 1.29E-35 dispersed
Cone5ag1520 Cone-Chr5:10357750 Cone7ag1892 Cone-Chr7:12152344 5.33E-55 dispersed
Cone7ag1892 Cone-Chr7:12152344 Cone10ag0996 Cone-Chr10:6791780 3.11E-15 dispersed
Cone4ag1974 Cone-Chr4:13862254 Cone7ag1892 Cone-Chr7:12152344 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1121 Blo01g01601 . Bda01g00480 . Bpe02g00344 . . Bma01g02371 . . . Cma09g00101 . . . Cpe06g00063 . . . . . . . . . . . . . . . Cone4ag1974 Cone7ag1892 . . . Csa03g04286 Chy04g00411 . . . . . . . . . Sed08g0779 . Cmo09g00097 . . . Car09g00089 . . Bhi09g02080 Tan01g5029 Cmetu02g0590 . Hepe01g1609 Mch11g0110 . . . . . . . . . . . Cme04g00462
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005991 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 2 1 2 6 1 39