Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1897 ATGAGGAAGTGGACGATCCCTTCTGTTCTGCTCCTGCTCTGCCTTCTCCTCGTCCTCCCTGATCCAGGTCGCAAACTTCACGCCAATGCGGAGGGAGATTCGGAGAAGCTGGTAGATCCTCTAAAGTTCGAGGAGAAGATGGGTGCGGTTCCACATGGACTATCCACTGATTCTGACGTTGCTAAGAGGGAGGCGGAATCAATCTCGAAGAGATCTCTTCGCGACAATGAGCAGAAGTTTGAGTTCCAAGCTGAGGTATCTCGGTTTATGGATATTATCATAAACTTATTGTACAGTAATAATGACATTTTGCTCAGGGAGTTGATCTCTAACGCTTCTGATATTAAGTTGGACATAGCGAATAAAATCCTCTCCGTTCGTGACAGAGGTATAGGAATGACAAAAGAGGATCTAATCAAGAACTTGAGAACTATAGCAAAATCTGGAACTTCAGCATTTATGGAGAAAATGCAATCAAGTGGAGATCTTAATCTCATCGGGCAATTCGGAGTTGGTTTCTACTCTGTATACCTCGTGGCTGACTATGTCGAAGTCATTACCAAAAACAATAAAGATAAACAGTATGTTTGGGAATCGAAGGCTGATTGGGCGTTTGTAATTTCTGAAGATACATGGAATGAACCCCTCGGACGTGGAACTGAAATTAGATTGCACCTCCGAGATGAAGCTGGGGAATACTTGGAGGAGAGCAAACTAAAACTGAAAGCAGCTCTTTGGCAGAAGGAGGGGAAAGAGGACGCTGGAAAAAGTAAAGATGCGGATGCGAAACAGCTGAAGAAAAAGACAGCGAAGGAAACAACTTATGAGTGGGAACTTTTGAATGATGCAAAAGCTATATGGCTGCGGAGTCCAAAGGAGGTGACGGATGATGAGTACACCAAATTTTATGCCACTCTAGCAAAGGATTTCAATGATGAGAAGCCTATGGCATGGAGTCACTTTAATGCTGAAGGTGATGTTGAGTTCAAAGCTGTTTTGTTTGTGCCTCCTATGATTCCTCGCAACCTATATGAGAGCTATTATAACTCTAATAAACACAATATGAAGTTATATGTTAGGCGCATTTTCATCTCGGATGAATTTGATGACCTTTTGCCAAAGTTCCTCAGCTTTTTGAAGGGACTTGTTATTTCCGACACTCTGCCACTCAATGCATCACGAGAAATGCTTCAACAACACAGCAGTCTGAAGACAATAAAGAAGAAACTCATCAGGAAGGCCCTTGATATGATCCGTAGAATAGCCGAGTACAATGGAAGCGACAAGATGGGTATACTTGGATCAGAGATGTTGATCACTCTTGGTTTTCTCTTCTTATCAACTTCTCTTTATATTTTTCCAGAAGTAGATGTTGAAAAATCCAACGGCGATGATGGAAAGAAGGGCCAATACACCAGACCTTGGAATGAGTTTGGCAAGTCCATCAAATTAGCACAAAGTCAGATGGTTATTTTCCTCACATACCCTGTTGATGAGTATCTGATGCAATATCTCATGGATTACGAGGACAAAAAGTTTCAAGACGTATCCAAGGAGGGTCTTAAACTAGGGAAAGACTCAAAGGCTAAGGAACTCAAGGAGTCATTTAAGGGGCTCACTGAATGGTGGAAGACTGCTCTGTCCAAGAATAATGTTGTCGATGATGTCAAAGTTTCCAACCGTCTGGATAAAACACCATGTGTGGTTGTTGCTTCGAAGTTTGGTTGGGGTGCAAATATGGAGAGGATTATGCTAGCACATACTTTTGAGTAA 1773 42.24 MRKWTIPSVLLLLCLLLVLPDPGRKLHANAEGDSEKLVDPLKFEEKMGAVPHGLSTDSDVAKREAESISKRSLRDNEQKFEFQAEVSRFMDIIINLLYSNNDILLRELISNASDIKLDIANKILSVRDRGIGMTKEDLIKNLRTIAKSGTSAFMEKMQSSGDLNLIGQFGVGFYSVYLVADYVEVITKNNKDKQYVWESKADWAFVISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKLKAALWQKEGKEDAGKSKDADAKQLKKKTAKETTYEWELLNDAKAIWLRSPKEVTDDEYTKFYATLAKDFNDEKPMAWSHFNAEGDVEFKAVLFVPPMIPRNLYESYYNSNKHNMKLYVRRIFISDEFDDLLPKFLSFLKGLVISDTLPLNASREMLQQHSSLKTIKKKLIRKALDMIRRIAEYNGSDKMGILGSEMLITLGFLFLSTSLYIFPEVDVEKSNGDDGKKGQYTRPWNEFGKSIKLAQSQMVIFLTYPVDEYLMQYLMDYEDKKFQDVSKEGLKLGKDSKAKELKESFKGLTEWWKTALSKNNVVDDVKVSNRLDKTPCVVVASKFGWGANMERIMLAHTFE 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12167078 12170587 - Conep07aG0195400.1 Cone7ag1897 442493

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1897 590 Gene3D - 523 590 IPR037196 -
Cone7ag1897 590 Pfam Hsp90 protein 490 588 IPR001404 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Cone7ag1897 590 Pfam Hsp90 protein 244 485 IPR001404 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Cone7ag1897 590 Gene3D - 65 262 IPR036890 -
Cone7ag1897 590 Gene3D - 487 522 - -
Cone7ag1897 590 Gene3D - 282 486 - -
Cone7ag1897 590 SUPERFAMILY HSP90 C-terminal domain 539 587 IPR037196 -
Cone7ag1897 590 SUPERFAMILY Ribosomal protein S5 domain 2-like 283 519 IPR020568 -
Cone7ag1897 590 CDD HATPase_Hsp90-like 87 240 IPR020575 -
Cone7ag1897 590 PRINTS 90kDa heat shock protein signature 78 98 IPR020575 -
Cone7ag1897 590 PRINTS 90kDa heat shock protein signature 99 121 IPR020575 -
Cone7ag1897 590 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 78 240 IPR036890 -
Cone7ag1897 590 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 115 212 - -
Cone7ag1897 590 PIRSF HSP90_HTPG 480 590 IPR001404 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Cone7ag1897 590 PIRSF HSP90_HTPG 54 116 IPR001404 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Cone7ag1897 590 PIRSF HSP90_HTPG 114 487 IPR001404 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Cone7ag1897 590 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 69 485 IPR001404 GO:0005524(InterPro)|GO:0006457(PANTHER)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0051082(PANTHER)|GO:0140662(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1897 K09487 - - sly:101265819 676.011
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0804 Cone-Chr6:4086932 Cone7ag1897 Cone-Chr7:12167078 1.21E-27 dispersed
Cone7ag1897 Cone-Chr7:12167078 Cone8ag1384 Cone-Chr8:10961541 5.33E-103 dispersed
Cone7ag1897 Cone-Chr7:12167078 Cone7ag1898 Cone-Chr7:12170936 4.55E-280 tandem
Cone4ag1979 Cone-Chr4:13882016 Cone7ag1897 Cone-Chr7:12167078 1.39e-311 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1132 . . . . . . . . Cmo05g00316 Cmo12g00353 . . . Car12g00379 . . Cpe07g00357 Bhi04g02197 . . . . . . . . . . . . . Cone4ag1980 Cone7ag1897 . . . . . . . Blo18g00775 . Bda01g01534 Bpe02g01732 . Bma01g00723 . . . . . Cma05g00315 Car05g00261 . Cpe11g00262 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000587 3 3 3 2 4 2 5 5 4 3 3 3 4 4 3 4 3 7 3 3 3 4 5 0 4 3 1 4 4 3 102