Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1900 ATGGAAGAGGTAGAGCTTGCCTCCTCCAGCAATGGAGCTATGGATAAGAATGCTGTTCCGAAAACAACGGGTGGAATATCTGATCGGCATGACGAAGAACTGAAACGAGTCTCATTCTTCGGCTTATTTACGGCGGCTGATAGTTTAGACTATTTGCTAATGTTGTTTGGTAGTATAGGAGCTTGCATTCATGGGGCCGCACTTCCTTTATTCTTTGTTTTGTTTGGTCGAATGATCGATTCTCTCGGACACTTATCTAAACATCCTCAGAGATTGTCTTCTAAGGTGTCTGAGAATGCTTTGTACCTGGTCTATCTCGGTCTCATCGTATTCGTATCGGCATGGATAGGCGTTGCTTTCTGGATGCAAACTGGGGAAAGACAGACTGCTCGTTTACGTTTGAAGTATCTCCAATCAATTCTAAGGAAAGATATTAGTTTCTTCGACACCGAGGCTAGAGACAGTAATCTCATTTTCCATATATCAAGTGATGCAATACTAGTACAAGATGCAATTGGAGACAAGACCGGCCACGCCATACGTTACCTTTCCCAATTCCTAATCGGATTTGCCATCGGTTTTTCATGTGTATGGAAATTGACACTTGTGACCTTAGCTGTTGTTCCCTTAATAGCTATTGCTGGTGGAACTTACACCATCATCATGTCTACCTTCTCGGAAAAAGGAGAGGCTGCTTATGCTGAAGCAGGGAAGGTAGCAGAAGAGGTCATATCACAGGTTCGAACTGTCTACTCGTTTGTAGGAGAGGATAGAGCTGTTGAAGCATATTCTAAGTCGCTTCAAAGAGCTCTTAAACTTGGGAAGAGAAGTGGTGTAGCAAAAGGAGTTGGTGTTGGATTCACTTACGGTCTTTTGTTTTGTGCATGGTCATTGCTTCTCTGGTATGCTGCCAAACTCGTTGTGCATGGAGATACTAATGGCGGGAAAGCATTCACCACTATGATCAATGTCATCTTTAGCGGATTTGCTCTCGGCCAAGCGGCTCCAAACCTTGGTGCCATTGCTAAAGGAAGAGTGGCAGCGGCTAATATAATTAGGATGATAGATACAGATTCTAATTCTAAGAGGTTTTCAGATGATGGATTGGTTTTGACGAAGGTTTCTGGTCAAATTGACTTCTGTGAGGTCTGTTTTGCTTATCCCTCAAGACCTCAGATGGTGTTTGACAAAATGAGCTTTTCAATTAGTGCCGGAAAGACCTTTGCTGTTGTCGGTCCCAGTGGTTCGGGAAAGAGCACCATTATTTCCATGGTTCAACGATTCTACGAACCCAGTTCTGGGAAGATACTGTTCGATGGACATGATGTTAGATGCCTCAAGTTAAAGTGGTTAAGAGAACAAATGGGATTGGTTAGTCAAGAACCGGCTTTATTCGCGACGACTATAGCAAACAACATTCTTTTTGGTAAAGAATATGCAAGCCTGGAACAGATCATTCAAGCGGCTAAAGCTGCAAATGCGCATTCTTTCATTCAAGAGTTTCCAGATGGTTACTCTACTCAGGTAGGTGAAGCAGGGACTCAACTTTCTGGTGGGCAAAAGCAGAGAATTGCAATTGCAAGGGCAGTGCTAAGAAACCCAAAACTTCTACTTCTAGATGAAGCAACTAGTGCTCTTGATTCAGAATCAGAACTTATTGTTCAGCAAGCACTAGACAAGATCATGTCTAACAGGACTACTATCATCATTGCACATCGCCTGTCCACAATTCGAACCGTCGATACAATCATGGTCTTGAAAAACGGTCAAGTTGTCGAGAGTGGAGCTCATTCCGAATTGATCTCCCAGAACGGAGAGTATGCAAATCTGGTGAATCTGCAAGTATCAGATCATGTTAATGATTCGAACATTATCTCCCATTCGGAAAGTTCTAGGCATTCCAGTTTTATAGAATCTGTTACTGGGAATAATGAGAAGGTCTTCAACCCAATTACAATCAATAACTTGCCATTGTCCCAATCAAATTCAAGCCCTTCTCCAAAAACTCCCTCTATTTGGGAACTGGTCAAGCTAAATGCACCAGAATGGCCTTATGCTGTGCTCGGGTCAATAGGCGCTATTATTGCTGGGGTTGAAGCACCTTTGTTTGCACTTGGAATCACACATGTTTTAACGGCATTTTATTCCCCTAATCATTCTAAGATTAAAGAAGAGGTTCAACTTGTTACTCTTGTATTTATAGGAGTAGCAGTTGTTACAGTCCCTGTATATCTCTTGCAGCACTACTACTATACATTGATGGGAGAAAGCCTCACCACTCGGGTTCGCTTGCTCATGTTCTCAGCGATACTTGAAAACGAAATTGGGTGGTTTGATTTTGAGGAGAATAGCACAGGATCCTTAACATCAATCTTAGCTGCAGATGCAACATTAGTAAGAAGTGCTCTTGCTGATCGTCTTTCAACAATTGTACAGAACACATCACTTACTGTCTCGGCTTTTGTAATTGCGTTCACATTGAGTTGGCGGTTAGCAGCTGTTGTTGTAGCCTGTCTGCCCCTTCTTATCGGAGCCTCCATTACAGAACAACTATTTCTGAAAGGTTTTGGAGGAGACTATAGCCGTGCATACAATAGAGCAACTTCTATAGCACGAGAAGCTATTGCTAATATACAGACCGTAGCAGCTTTCGGGGCCGAAGAACGCGTTTCAGCCCAATTCGCTGCTGAACTAAGCAAACCGAACAAGGAAGCATTGTTGAGAGGTCATATATCGGGTTCGTTTTATGGCTTAACACAGCTATTGTCATTCTGTTCCTATGCGCTTGGACTCTGGTATGCGTCTATTCTTATCAAGCATAAGGATTCAAAATTTGGAGACGTAATGAAGTCGTTTATGGTTTTAATAATAACCGCATTAGGAATAGCAGAAACTCTTGCTCTTACTCCGGATATTGTAAAAGGTTCGCAAGCATTGGGTTCTGTTTTTGGAATTCTTTATAGAAAAACAGCTATAGAGAATAACAATCCTTCATCTAAGGTGGTAAGTGATATCAAGGGAGATATTGAATTCATGAATGTTAGTTTCACTTACCCTGCAAGGCCTGATGTAACCATTCTTAAGGATTTGAACCTAAAAGTATCAACCGGAAAGAGCCTGGCCGTAGTGGGCCCGAGTGGGTCCGGAAAAAGTACCATAATTGGGCTTGTAATGAGGTTTTATGATCCGACTTCAGGGTCCATTTTGATCGACGGGTGTAACATCAAAAGCATGAATTTAAAATCGTTAAGAATGAAAATGGGTTTGGTTCAACAGGAGCCGGCATTGTTCTCTACAACGATTTATGAAAACATCAAGTACGGGAATCAACATGCGACGGAAATCGAGATAATGAACGCATCAAAGGCGGCAAATGCTCATGGATTTATCATCAGAATGCCAGAAGGTTATCAAACTGAAGTTGGCGAAAAGGGAGTGCAGTTATCAGGCGGGCAAAAACAAAGAGTAGCTATTGCCAGAGCCATATTGAAAGACCCTTCTATTCTTCTCTTGGATGAAGCCACAAGTGCATTGGATTCAGCATCCGAGAAGATAGTTCAACAGGCGCTCGATACACTTATGGCCGGGCGGACCACAATAATGGTGGCCCACCGGTTGAGTACTATCCAAGATGCAGATTCGATAGCTGTTTTGCAAAATGGTCGGGTGGTTGAGACCGGACAACACGAGCAACTGATGACAAGGCCGAGCGGTGTTTATAAACAGTTAGTTAGTCTACAACAGGAAAAGAACGTACCAAGTGGTTGA 3768 42.65 MEEVELASSSNGAMDKNAVPKTTGGISDRHDEELKRVSFFGLFTAADSLDYLLMLFGSIGACIHGAALPLFFVLFGRMIDSLGHLSKHPQRLSSKVSENALYLVYLGLIVFVSAWIGVAFWMQTGERQTARLRLKYLQSILRKDISFFDTEARDSNLIFHISSDAILVQDAIGDKTGHAIRYLSQFLIGFAIGFSCVWKLTLVTLAVVPLIAIAGGTYTIIMSTFSEKGEAAYAEAGKVAEEVISQVRTVYSFVGEDRAVEAYSKSLQRALKLGKRSGVAKGVGVGFTYGLLFCAWSLLLWYAAKLVVHGDTNGGKAFTTMINVIFSGFALGQAAPNLGAIAKGRVAAANIIRMIDTDSNSKRFSDDGLVLTKVSGQIDFCEVCFAYPSRPQMVFDKMSFSISAGKTFAVVGPSGSGKSTIISMVQRFYEPSSGKILFDGHDVRCLKLKWLREQMGLVSQEPALFATTIANNILFGKEYASLEQIIQAAKAANAHSFIQEFPDGYSTQVGEAGTQLSGGQKQRIAIARAVLRNPKLLLLDEATSALDSESELIVQQALDKIMSNRTTIIIAHRLSTIRTVDTIMVLKNGQVVESGAHSELISQNGEYANLVNLQVSDHVNDSNIISHSESSRHSSFIESVTGNNEKVFNPITINNLPLSQSNSSPSPKTPSIWELVKLNAPEWPYAVLGSIGAIIAGVEAPLFALGITHVLTAFYSPNHSKIKEEVQLVTLVFIGVAVVTVPVYLLQHYYYTLMGESLTTRVRLLMFSAILENEIGWFDFEENSTGSLTSILAADATLVRSALADRLSTIVQNTSLTVSAFVIAFTLSWRLAAVVVACLPLLIGASITEQLFLKGFGGDYSRAYNRATSIAREAIANIQTVAAFGAEERVSAQFAAELSKPNKEALLRGHISGSFYGLTQLLSFCSYALGLWYASILIKHKDSKFGDVMKSFMVLIITALGIAETLALTPDIVKGSQALGSVFGILYRKTAIENNNPSSKVVSDIKGDIEFMNVSFTYPARPDVTILKDLNLKVSTGKSLAVVGPSGSGKSTIIGLVMRFYDPTSGSILIDGCNIKSMNLKSLRMKMGLVQQEPALFSTTIYENIKYGNQHATEIEIMNASKAANAHGFIIRMPEGYQTEVGEKGVQLSGGQKQRVAIARAILKDPSILLLDEATSALDSASEKIVQQALDTLMAGRTTIMVAHRLSTIQDADSIAVLQNGRVVETGQHEQLMTRPSGVYKQLVSLQQEKNVPSG 1255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12180404 12184889 + Conep07aG0195700.1 Cone7ag1900 442496

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1900 1255 FunFam ABC transporter B family member 1 666 975 - -
Cone7ag1900 1255 FunFam ABC transporter B family member 4 368 621 - -
Cone7ag1900 1255 ProSitePatterns ABC transporters family signature. 1148 1162 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone7ag1900 1255 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1000 1247 IPR027417 -
Cone7ag1900 1255 CDD ABC_MTABC3_MDL1_MDL2 1009 1247 - -
Cone7ag1900 1255 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 687 974 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone7ag1900 1255 ProSitePatterns ABC transporters family signature. 516 530 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone7ag1900 1255 Pfam ABC transporter 1027 1176 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone7ag1900 1255 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 55 343 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone7ag1900 1255 PANTHER ABC TRANSPORTER B FAMILY 27 634 IPR039421 GO:0005887(PANTHER)|GO:0042626(PANTHER)
Cone7ag1900 1255 FunFam ABC transporter B family member 1 41 376 - -
Cone7ag1900 1255 Gene3D ABC transporter type 1, transmembrane domain 41 978 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cone7ag1900 1255 CDD ABC_6TM_Pgp_ABCB1_D1_like 54 351 - -
Cone7ag1900 1255 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1009 1245 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone7ag1900 1255 Pfam ABC transporter 396 544 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone7ag1900 1255 SMART AAA_5 404 590 IPR003593 GO:0016887(InterPro)
Cone7ag1900 1255 SMART AAA_5 1036 1228 IPR003593 GO:0016887(InterPro)
Cone7ag1900 1255 Gene3D - 368 622 IPR027417 -
Cone7ag1900 1255 MobiDBLite consensus disorder prediction 1 27 - -
Cone7ag1900 1255 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 367 614 IPR027417 -
Cone7ag1900 1255 CDD ABC_MTABC3_MDL1_MDL2 378 614 - -
Cone7ag1900 1255 Gene3D - 999 1253 IPR027417 -
Cone7ag1900 1255 Pfam ABC transporter transmembrane region 56 326 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone7ag1900 1255 Pfam ABC transporter transmembrane region 691 960 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone7ag1900 1255 SUPERFAMILY ABC transporter transmembrane region 33 351 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cone7ag1900 1255 SUPERFAMILY ABC transporter transmembrane region 674 986 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cone7ag1900 1255 CDD ABC_6TM_Pgp_ABCB1_D2_like 677 992 - -
Cone7ag1900 1255 FunFam ABC transporter B family member 4 999 1251 - -
Cone7ag1900 1255 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 378 613 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1900 K05658 - - vvi:100259227 1852.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0582 Cone-Chr12:4535622 Cone7ag1900 Cone-Chr7:12180404 4.51E-285 dispersed
Cone1ag0792 Cone-Chr1:53887890 Cone7ag1900 Cone-Chr7:12180404 3.92E-64 dispersed
Cone3ag0257 Cone-Chr3:1355665 Cone7ag1900 Cone-Chr7:12180404 1.72E-163 dispersed
Cone7ag1900 Cone-Chr7:12180404 Cone8ag0595 Cone-Chr8:5053599 0 dispersed
Cone7ag1900 Cone-Chr7:12180404 Cone16ag0856 Cone-Chr16:9101076 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1146 Blo01g01605 . Bda01g00476 . . . . Bma01g02378 . . . Cma09g00095 . . . . . . . . . . . . . . . . . . . . Cone7ag1900 . . . . . . . . . . . . . . . . Cmo09g00092 . . . Car09g00083 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013207 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 27