Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1904 ATGGCTTCTTTCTCCATCCGATTGAAGATATGGTCAGTGAGTATAGTACTGGTTATCATCAGTATCTTGCACCCCACACACGCCATCATAAAGCTCCCCCAAAATGTTACGATCCCGGCCGTCTTTGCTTTTGGAGATTCGATCATGGACACGGGCAACAACAATCATCTTGACACAATTGTCAAGAGTGATTTCCCTCCTTATGGTAAGGACTTTCTGGGAGGCATCCCTACTGGCAGATTCTGCAACGGAAAAGTCCCTTCAGATCTCATTGCTGAAGAATTGGGAGTCAAAGAGTTCTTGCCTGCATATAACTCTTATCTACAACCTAATGATCTTGTTACTGGAGTGTGTTTCGCTTCAGGCGCTTCGGGATATGATCCTTTAACCCCTCAATTAATGTCAGTTCTCTCAATGTCCCAGCAGTTGGAACTGTTCAAGCAATACATCGCAAAACTGAGATCCATGGTTGGCGACGACAGAACCAATTTCATATTAGCAAACAGTGTATACCTGGTGGTATCGGGCAGCGATGACATCGCCAACACCTATTTTACGGCACGGGTCCGACAGCTGCAGTACGATCTCAATTCTTACACTGATCTCATGCTTAACGGGGCTACTGATTTCATCAAGGAACTTTACGGACTGGGGGCACGAAGAATGGGTGTATTTAGTACACCACCGATCGGATGCGTACCTTCGCAAAGGACTCTGAGCGGAGGGATTGAAAGAGAGTGTGCAGAAGATCATAACAAAGCAGCAAAACTGTTCAACGCTAAGCTCTCGACGAAACTGGATTCTCTTAATCATTACTATCCCGGCAGCAAGCTTGTGTACATAGATGTTTACAACCCTCTAGTTGATCTCATTCAAAATCCTGGACAATACGGTTTCAAAGTTTCAAAGGATGGGTGCTGTGGGACAGGGAAGATAGAAGTGTCCGTCCTTTGTTCGCAGTTTAGTGAGACCTGCCCAAACGCGTCTGATTATGTGTTTTGGGATAGTTATCATCCGACCGAACGAGCTTATAGAACTCTCATCTCTCCACTCCTCCAAAATTATGTAAAAAACTTCTTCTAA 1083 44.88 MASFSIRLKIWSVSIVLVIISILHPTHAIIKLPQNVTIPAVFAFGDSIMDTGNNNHLDTIVKSDFPPYGKDFLGGIPTGRFCNGKVPSDLIAEELGVKEFLPAYNSYLQPNDLVTGVCFASGASGYDPLTPQLMSVLSMSQQLELFKQYIAKLRSMVGDDRTNFILANSVYLVVSGSDDIANTYFTARVRQLQYDLNSYTDLMLNGATDFIKELYGLGARRMGVFSTPPIGCVPSQRTLSGGIERECAEDHNKAAKLFNAKLSTKLDSLNHYYPGSKLVYIDVYNPLVDLIQNPGQYGFKVSKDGCCGTGKIEVSVLCSQFSETCPNASDYVFWDSYHPTERAYRTLISPLLQNYVKNFF 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12207104 12208577 + Conep07aG0196100.1 Cone7ag1904 442500

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1904 360 FunFam GDSL esterase/lipase APG 30 356 - -
Cone7ag1904 360 Gene3D SGNH hydrolase 27 356 IPR036514 -
Cone7ag1904 360 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 41 52 IPR008265 GO:0006629(InterPro)|GO:0016298(InterPro)
Cone7ag1904 360 PANTHER GDSL ESTERASE/LIPASE EXL3 26 349 IPR050592 GO:0005576(PANTHER)
Cone7ag1904 360 CDD SGNH_plant_lipase_like 39 355 IPR035669 -
Cone7ag1904 360 Pfam GDSL-like Lipase/Acylhydrolase 41 347 IPR001087 GO:0016788(InterPro)
Cone7ag1904 360 SUPERFAMILY SGNH hydrolase 41 355 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1904 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0063 Cone-Chr20:300786 Cone7ag1904 Cone-Chr7:12207104 1.98E-117 dispersed
Cone7ag1904 Cone-Chr7:12207104 Cone8ag1558 Cone-Chr8:11663991 5.34E-95 dispersed
Cone12ag0830 Cone-Chr12:7515825 Cone7ag1904 Cone-Chr7:12207104 1.04E-140 wgd
Cone20ag0062 Cone-Chr20:295814 Cone7ag1904 Cone-Chr7:12207104 2.85E-124 wgd
Cone7ag1904 Cone-Chr7:12207104 Cone8ag0864 Cone-Chr8:8533182 6.62E-139 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1156 Blo01g01609 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1904 . Cone20ag0063 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001408 2 2 3 2 2 2 3 1 2 2 1 3 2 2 2 2 2 5 3 1 2 4 4 2 3 1 2 2 2 7 73