Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1905 ATGTTGATCGGGAAGAAGATCACGCTGAGGAGCTTTGATGGAGAGACCTTCGAGGTTGATGAGGCGGTGGCGCTGGAATCGCAGACGATTAAGCACATGATCGAAGACGATTGCGCCAATAACGGAATCCCCGTTCCGAACGTGACGAGCAAGATCTTGTCCAAGGTTATTGAGTACTGCCGGAAGCACGTCGAGGCCCCCAAGGCAGAAGATCGTGCCCCCTCTGTTGATGATGAACTCAAGGCTTGGGACCACGAGTTCGTCAAGGTCGACCAGGCTACCCTCTTTGACCTCATATTGGCTGCAAATTATCTCAACATCAAGAGCCTCTTGGATTTGACTTGCCAGACAGTTGCTGATATGATCAAGGGAAAGACTCCCGAGGAGATCCGCAAGACGTTTAATATCAAGAATGACTTCACACCTGAGGAAGAAGAGGAGGTTCGCAGGGAGAATCAGTGGGCATTTGAGTGA 474 50.63 MLIGKKITLRSFDGETFEVDEAVALESQTIKHMIEDDCANNGIPVPNVTSKILSKVIEYCRKHVEAPKAEDRAPSVDDELKAWDHEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12210370 12211819 + Conep07aG0196200.1 Cone7ag1905 442501

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1905 157 FunFam SKP1-like protein 1A 3 157 - -
Cone7ag1905 157 SUPERFAMILY Skp1 dimerisation domain-like 80 155 IPR036296 GO:0006511(InterPro)
Cone7ag1905 157 CDD BTB_POZ_SKP1 6 122 - -
Cone7ag1905 157 Pfam Skp1 family, dimerisation domain 108 155 IPR016072 GO:0006511(InterPro)
Cone7ag1905 157 PIRSF SCF_Skp 2 157 IPR016897 GO:0006511(InterPro)
Cone7ag1905 157 SMART skp1_3 4 107 IPR001232 GO:0006511(InterPro)
Cone7ag1905 157 Gene3D Potassium Channel Kv1.1; Chain A 2 157 IPR011333 -
Cone7ag1905 157 Pfam Skp1 family, tetramerisation domain 5 64 IPR016073 GO:0006511(InterPro)
Cone7ag1905 157 PANTHER SKP1 7 154 IPR016897 GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006511(InterPro)|GO:0031146(PANTHER)|GO:0097602(PANTHER)
Cone7ag1905 157 SUPERFAMILY POZ domain 5 66 IPR011333 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1905 K03094 - - rcu:8274704 280.796
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0074 Cone-Chr14:396164 Cone7ag1905 Cone-Chr7:12210370 5.09E-17 dispersed
Cone12ag1235 Cone-Chr12:9565752 Cone7ag1905 Cone-Chr7:12210370 3.28E-24 wgd
Cone12ag0833 Cone-Chr12:7528480 Cone7ag1905 Cone-Chr7:12210370 1.11E-13 wgd
Cone4ag1999 Cone-Chr4:13964185 Cone7ag1905 Cone-Chr7:12210370 6.42E-107 wgd
Cone7ag1905 Cone-Chr7:12210370 Cone8ag0867 Cone-Chr8:8545125 5.62E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1163 . . . . . . . . . . . . . . . . . Bhi04g00111 . . . . . . . . . . . . . . Cone7ag1905 . . . . . . Blo17g00738 Blo18g00770 Bda08g01208 Bda01g01542 Bpe02g01739 Bpe05g00151 . Bma05g00182 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000912 2 2 2 2 2 3 4 3 3 2 3 3 3 3 3 3 3 2 5 3 2 3 3 3 2 3 3 4 3 4 86