Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1906 ATGGCTGCCACCGCCGATCCCTCTGGAAATAGCTTTTCCGGCGACAATCTGAACGGCCCTGATTTCAGACGGGGTAATCTATCGTCTCCGTGGGCTCAAATCGTCCGAGGGGAACCAGAACCAATCTCAGCCGTTCCATCGTCGACACCCTCGCTATCTTCATCGGTGGCTCCTGCAAAGGAACAATCATCGGTGGTTGCTGATTGCTCCTCTCCAAAGGTGGCTCATTCCTCACCGCTTCCAGATAATCTTGCTCCAGCTGAGGCGTCCGATTCTAGTAACGGCAATGCAGCGGCTTGGCCCAAGAAGCAGGCTTGGAATAAGCCCTCCAACGGCGTCCTTGACGCCGGTCCCGTAATGAGTGCGGCCTCTTGGCCCCCTCTGTCAGAATCGGCGAGAGGTTCGCCTAAATTGCCAGCAGCTGACTCCTCTTCCAAGCCCGACCCTGATGGATCAGTCCTCACTCCTCAGGTACCCTTAAATGCATCTCGTAAACAAACTACCAGTCGGGAGAAATCTAATTCTACACCAAACAATACAATGCCAGCTCGGCAAAGATCCACAAAGCGTGGCAGTGGTGGCGGCTCTCTAGGTGGGCCTGTCATTGGTGGATTTATGCATCCCCATCCTCCTCCACCACCGCCACCACCGCCCCTTCCTCCTTTCCCCATATTCAACATGCCTCCAAATAGTTATGGGGGCCTGGTTCCAGCAATGCTAGATCATTCTCCAGGAGAACCTTCTGTGAGAGGCCATAATTGGGATGCAAGACCTGTAGGAGGGTTTGTGCATCAACAAAAGGTGGTTAATGATCGTCGTAATACCTCCCGTAGGGGAAATTTTGGCCCACACCCACGTGGAGATGGGCCGCACCATCATAATCAGGGAGGCAGGCGTGATCAAGATCGTGGAAGTCATTATAATGCCAGAGAAACTCAGGTGAATCAGCAGAGACCTCCACTCAGGGGCTTTGTAAGGCCTTCACCTCCCTTTACTCCTCCATTTGTGGCTCCTCAGCCTATTCCGCCGCTCGGAACTCCTCTTGCCTTTTCTGAGTTCATCTATTATCCTGCATTGCCTGTGGAGCCTTATAGGAATGTGCCAGTCATCCCACCTTCTGTGATGTATATTCCGTCTCATGATCCTAATTTACCTGCGTTATTAGTCAACCAGATAGATTTTTATTTCAGCGACGATAATCTGGTAAGAGACACTTATTTGAGGTCAAATATGGATGACCAGGGCTGGGTTCCCATTTCACTAATAGCAACCTTCCCTCGTGTTATGGGTTTGACGAACAATATCCAGTTGATATCTGAAAGCTTGAGAGCTTCAAATGTTGTGGAAGTACAGGAGGATAAGTTGAGAAGGCGGAATGAGTGGATGAAATGGTTGCCATTGCCAAAAAATCAGTTGGGAATGGATACAAGCTTGTCGTCTCCAGGCAGATCAACTTACAGCATGCTGGCAACTTCTTTCCAGAAGATCACAGTGGAAGAAACCAGTAATAGCCAAAATATGGCAACAGGTAAGGGAGACCCTAGTTCCCAGGTTGCACCGGCTTCAATTGAGGCAGCTGGTAACTCACAACTGCCCAACGGGGAGTGA 1608 50.44 MAATADPSGNSFSGDNLNGPDFRRGNLSSPWAQIVRGEPEPISAVPSSTPSLSSSVAPAKEQSSVVADCSSPKVAHSSPLPDNLAPAEASDSSNGNAAAWPKKQAWNKPSNGVLDAGPVMSAASWPPLSESARGSPKLPAADSSSKPDPDGSVLTPQVPLNASRKQTTSREKSNSTPNNTMPARQRSTKRGSGGGSLGGPVIGGFMHPHPPPPPPPPPLPPFPIFNMPPNSYGGLVPAMLDHSPGEPSVRGHNWDARPVGGFVHQQKVVNDRRNTSRRGNFGPHPRGDGPHHHNQGGRRDQDRGSHYNARETQVNQQRPPLRGFVRPSPPFTPPFVAPQPIPPLGTPLAFSEFIYYPALPVEPYRNVPVIPPSVMYIPSHDPNLPALLVNQIDFYFSDDNLVRDTYLRSNMDDQGWVPISLIATFPRVMGLTNNIQLISESLRASNVVEVQEDKLRRRNEWMKWLPLPKNQLGMDTSLSSPGRSTYSMLATSFQKITVEETSNSQNMATGKGDPSSQVAPASIEAAGNSQLPNGE 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12214154 12218731 - Conep07aG0196300.1 Cone7ag1906 442502

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1906 535 Gene3D - 377 465 IPR036388 -
Cone7ag1906 535 ProSiteProfiles La-type HTH domain profile. 378 467 IPR006630 -
Cone7ag1906 535 PANTHER LUPUS LA PROTEIN-RELATED 140 470 IPR045180 GO:0003723(PANTHER)
Cone7ag1906 535 MobiDBLite consensus disorder prediction 500 535 - -
Cone7ag1906 535 MobiDBLite consensus disorder prediction 44 71 - -
Cone7ag1906 535 CDD LAM 388 458 - -
Cone7ag1906 535 MobiDBLite consensus disorder prediction 270 305 - -
Cone7ag1906 535 MobiDBLite consensus disorder prediction 1 221 - -
Cone7ag1906 535 MobiDBLite consensus disorder prediction 205 221 - -
Cone7ag1906 535 SUPERFAMILY Winged helix DNA-binding domain 376 467 IPR036390 -
Cone7ag1906 535 SMART la 382 460 IPR006630 -
Cone7ag1906 535 MobiDBLite consensus disorder prediction 1 17 - -
Cone7ag1906 535 Pfam La domain 389 443 IPR006630 -
Cone7ag1906 535 MobiDBLite consensus disorder prediction 148 192 - -
Cone7ag1906 535 MobiDBLite consensus disorder prediction 262 305 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1906 K18757 - - cit:102616770 457.218
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0474 Cone-Chr1:4557622 Cone7ag1906 Cone-Chr7:12214154 6.23E-20 dispersed
Cone5ag1428 Cone-Chr5:9063150 Cone7ag1906 Cone-Chr7:12214154 2.69E-20 dispersed
Cone7ag1906 Cone-Chr7:12214154 Cone8ag0936 Cone-Chr8:8987742 3.29E-07 dispersed
Cone17ag1422 Cone-Chr17:9741583 Cone7ag1906 Cone-Chr7:12214154 4.32E-101 wgd
Cone20ag0060 Cone-Chr20:288760 Cone7ag1906 Cone-Chr7:12214154 5.42E-84 wgd
Cone4ag1997 Cone-Chr4:13955489 Cone7ag1906 Cone-Chr7:12214154 2.47E-303 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1168 . Blo12g00877 . Bda03g00295 . . Bma04g00255 . . . Cma01g01985 . Car01g01556 . . . . . . . . . . . . . . . . . . . Cone7ag1906 Cone17ag1422 Cone20ag0060 Lsi04g01766 Csa03g04297 Chy04g00400 . . . Bda08g01199 Bda01g01544 Bpe02g01740 Bpe05g00153 . Bma05g00183 Sed13g1555 Cmo01g02043 . . . . . . Cpe02g00060 Bhi09g02069 Tan01g5044 Cmetu04g1063 . . Mch11g0099 . . . . . . . . . . . Cme04g00449
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003873 7 2 3 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 44