Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1911 ATGTTCTTTCTCTACCCAACTTCGTCGGTGAAAGTGCTTCAGACTTCTTCGTCTTTCCCGTTATTTTTCCCTCGAAGTCGGAGGAGAATTTCTCCCAGAGTGTTGCTACGCAGAGCGAGCACTAGTTCTAGTTTTAGCGAAGGCACTGATTCTGATGGAAACGAAGAAACTCTGGCCGGACAAAGAAGCAATTACGCCGGTTTCCGACTAGAGGATACTGTGGACGCTAAGCCTGGTAAGATTAGGCTTGATTCTTGGATCTCTACTCGCATCAACGGCATCAGTAGGGCTCGCGTGCAGTCCAGTATCCGCTCCGGTCTCGTTAGCGTAAATGGCCGAGTTATCGATAAGACTTCACACAATGTAAAGGCTGGTGATAAGGTCAATTGCACAATCGCAGAGTTGCGAGCTCTAAGAGCTGAGCCTGAAAACATTCCTTTGGATATAGTCTATGAAGATGATCACGTGCTAGTCGTTAACAAACCTGCACACATGGTCGTTCATCCAGCACCTGGCAATGCTAATGGCACACTTGTAAACGGTATTCTCCACCATTGCAGTCTCCCTTTTTCAAACCAGGAAGTCCTTTCCGACACTGAGGATATATCTGACAACGAGTCATGTTCAAATGAAGTTGGTGGGCTATCTGTCCGCCCAGGGATTGTGCACAGATTGGATAAGGGTACTAGTGGATTGCTTGTTGTTGCAAAGGATGAACATTCTCATGCCCACTTATCAGAACAATTTAAGCTGCGTACTATCGAGAGAGTATATATTAGTCTTACTTGTGGAGTTCCATCACCAACTGTGGGACGGATTGAGGTACCAATTGGCCGTGATCCTAACAATCGGATTCGCATGAGTGCTATTCCTGGACCAAGTAACAGTAATCAAGCTCGCCATGCTGCTAGTAGGTATAAAGTAATCGAAATACTTGCTAATGGTGGAGCTGCCTTGGTCGAGTGGAAATTAGAAACTGGGCGCACTCATCAGATCCGTGCGCATGCAAAGTACATTGGAGTGCCTTTGCTGGGAGATGTGGTGTATGGTGGAACCAAGAGCATGGCCTTTTCACTACTTCAGCCCAGAACATCACCTGACTGTCATGACCTTCTTTTGCAACTAGTTTCTGGATTAGAGAGGCCTTGCCTCCATGCTTTGGGACTCGGGTTTAGACATCCTCACAGGGGAGACAACCTCCAGTTTTCATGCCCTCCCCCAGTAGATTTTACTATGGTATTGGGCCAGCTACGCAAAACTGCGACAGAGAAGCCCGAATCAAAGAAATTTTGA 1293 46.87 MFFLYPTSSVKVLQTSSSFPLFFPRSRRRISPRVLLRRASTSSSFSEGTDSDGNEETLAGQRSNYAGFRLEDTVDAKPGKIRLDSWISTRINGISRARVQSSIRSGLVSVNGRVIDKTSHNVKAGDKVNCTIAELRALRAEPENIPLDIVYEDDHVLVVNKPAHMVVHPAPGNANGTLVNGILHHCSLPFSNQEVLSDTEDISDNESCSNEVGGLSVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLRTIERVYISLTCGVPSPTVGRIEVPIGRDPNNRIRMSAIPGPSNSNQARHAASRYKVIEILANGGAALVEWKLETGRTHQIRAHAKYIGVPLLGDVVYGGTKSMAFSLLQPRTSPDCHDLLLQLVSGLERPCLHALGLGFRHPHRGDNLQFSCPPPVDFTMVLGQLRKTATEKPESKKF 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12241825 12244549 + Conep07aG0196800.1 Cone7ag1911 442507

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1911 430 Gene3D Pseudouridine synthase 137 407 - -
Cone7ag1911 430 SMART s4_6 81 146 IPR002942 GO:0003723(InterPro)
Cone7ag1911 430 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 92 411 IPR050188 -
Cone7ag1911 430 Pfam S4 domain 82 128 IPR002942 GO:0003723(InterPro)
Cone7ag1911 430 Gene3D - 68 135 IPR036986 GO:0003723(InterPro)
Cone7ag1911 430 FunFam RNA pseudouridine synthase 2 chloroplastic 68 136 - -
Cone7ag1911 430 Pfam RNA pseudouridylate synthase 155 336 IPR006145 GO:0001522(InterPro)|GO:0003723(InterPro)|GO:0009451(InterPro)|GO:0009982(InterPro)
Cone7ag1911 430 SUPERFAMILY Pseudouridine synthase 141 419 IPR020103 GO:0001522(InterPro)|GO:0003723(InterPro)|GO:0009451(InterPro)|GO:0009982(InterPro)
Cone7ag1911 430 CDD S4 81 160 - -
Cone7ag1911 430 ProSiteProfiles S4 RNA-binding domain profile. 81 154 - -
Cone7ag1911 430 NCBIfam RluA family pseudouridine synthase 82 417 IPR006225 GO:0001522(InterPro)|GO:0003723(InterPro)|GO:0009451(InterPro)|GO:0009982(InterPro)
Cone7ag1911 430 CDD PseudoU_synth_RluA_like 156 391 IPR006145 GO:0001522(InterPro)|GO:0003723(InterPro)|GO:0009451(InterPro)|GO:0009982(InterPro)
Cone7ag1911 430 ProSitePatterns Rlu family of pseudouridine synthase signature. 222 236 IPR006224 GO:0001522(InterPro)|GO:0003723(InterPro)|GO:0009451(InterPro)|GO:0009982(InterPro)
Cone7ag1911 430 SUPERFAMILY Alpha-L RNA-binding motif 81 132 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1911 K06180 - - cit:102619972 574.704
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag1911 Cone-Chr7:12241825 Cone18ag0510 Cone-Chr18:2487585 1.77E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g167 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01399 Cam08g1878 Cec08g1455 Cco08g1589 Clacu08g1570 . Cre08g1354 . Cone7ag1911 . . . . . Cme03g01534 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01295 . Chy03g01043 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005129 0 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 0 1 4 1 36