Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1913 ATGTCGTCCAACATCGTTAGCACGGTGATTGATAAATGCCGTCCTGTCCGCTATGGAATTCCTATCCTCCAAGTCCTCGCCTTCTTCAACTGGGATACTACACGAGATGGATTCGAGCACTCAGCCCAGCCATACAACGAGATGGTGGGAAGAAATGTAGGAATCAAGGTAGAAACTTTCGCCATTCTTATAGGCGATGTTAAGGCTGGATTAGGCCCCGAGGCAGTTCATGCTTTTAATCGAATGGAAGAATATGGCTGTAAGCCTGATAAAATAGCTTTTTCAATTCTGATCAGCATCTTATGTCGGAAAAGAAAGGCCCAAGAAGCCCAAAAGATTTTCGGCAGTTTAAAGGATCGATTCCAGCCTGATGTTGTTGTGTACACCAATTTGATCAATGGGGGGTGTAGAACTGATGTAAACATTACAGAAGCTGAGAAGTTGTTTGGAGAAATGAAGACGGGATTAAACCCAATATGTGACCAAATATCTCACGCCCAGGATGTTGTTGCTGAGATATTGATGCAGGGTTCACGAGAAAGCAGTGTGGACCGAAAAGATGAAGAGACTATGATGCCCTCCCGACACAATTACCTTATCGAAAGCCATTGCAAGGATGGGAATTATGAAGAGGCTGTAAAAGTGCTTAATTCCATGGTTAAGAAAGGGTGCTCCCCAGATGTCTCGACTTTCAATCCCATATTCCGGTGCATGTTTGCTGAATCAAAATCGACCGATATGGTTTTCAAATTGAAGAAGGAGATGAAGGAGGAGGAAGTCGAGCCGAATGTGAATACTTATCGGGTTTTGATCTCGTTGTATTGCGGGATGGGGCATTGGAACAATGCTCATAAGTTCTTTAGGGAGATGATAGAGGAGAAATGCCTGAAACCAAGCTCGTTGCAGTATATTATGGTTCTGCAACAACTGAGGAAAGCAGGGCAGCTGAAAAAGCATGGGGAATTGGTCGAGAAGATGGTTGAGAGAGGATTTACTGCTCCAAGATTGCAGTAA 1014 43.98 MSSNIVSTVIDKCRPVRYGIPILQVLAFFNWDTTRDGFEHSAQPYNEMVGRNVGIKVETFAILIGDVKAGLGPEAVHAFNRMEEYGCKPDKIAFSILISILCRKRKAQEAQKIFGSLKDRFQPDVVVYTNLINGGCRTDVNITEAEKLFGEMKTGLNPICDQISHAQDVVAEILMQGSRESSVDRKDEETMMPSRHNYLIESHCKDGNYEEAVKVLNSMVKKGCSPDVSTFNPIFRCMFAESKSTDMVFKLKKEMKEEEVEPNVNTYRVLISLYCGMGHWNNAHKFFREMIEEKCLKPSSLQYIMVLQQLRKAGQLKKHGELVEKMVERGFTAPRLQ 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12245977 12247213 + Conep07aG0197000.1 Cone7ag1913 442509

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1913 337 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 263 297 IPR002885 -
Cone7ag1913 337 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 196 332 - -
Cone7ag1913 337 Pfam PPR repeat 260 290 IPR002885 -
Cone7ag1913 337 Pfam PPR repeat 86 114 IPR002885 -
Cone7ag1913 337 Pfam PPR repeat family 197 238 IPR002885 -
Cone7ag1913 337 Gene3D Tetratricopeptide repeat domain 29 194 IPR011990 GO:0005515(InterPro)
Cone7ag1913 337 Gene3D Tetratricopeptide repeat domain 195 335 IPR011990 GO:0005515(InterPro)
Cone7ag1913 337 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 226 IPR002885 -
Cone7ag1913 337 NCBIfam pentatricopeptide repeat 196 228 IPR002885 -
Cone7ag1913 337 NCBIfam pentatricopeptide repeat 266 296 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1913 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1989 Cone-Chr4:13937384 Cone7ag1913 Cone-Chr7:12245977 3.78E-77 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g164 . Blo12g00873 . Bda03g00299 . Bpe04g00260 Bma04g00261 . . . . . Car01g01561 . . . . . . . . . . . . . . . . . . . Cone7ag1913 . . Lsi04g01777 . Chy04g00393 . . . . . . Bpe14g00404 . . . . . . . . . . . . . . . . . . Cla05g01599 Cam05g1710 Cec05g1710 Cco05g1767 Clacu05g1697 Cmu05g1586 Cre05g1705 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012790 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 0 1 1 1 28