Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1916 ATGTCAGCACCACCACCGCCGGCCTTTAGCGGTACTAGTGAGTGGAGTATGGAGGTTCAGAGTAAGCATTATCCTGAGCCTCTTGCCTCCCATGAAGAGATTATCAAGGACCCTGCTATTTTTTGGGATACTCTCAGGCGCTTCCATTTTTTAATGAGCACTAAATTCATGATTCCTGTGATTGGGGGGAAGGAGCTAGACTTGCATGTATTATATTCAGAAGTCACCAGAAAGGGTGGTCATGAAAAGGTTGTTGCAGAAAAGAAATGGAGGGAAGTGGGCAATATATTTAACTTCTCTCCAACAACAACAAGCGCTTCTTTTGTTTTGAGGAAACACTACTCCAGTCTCCTTTACTATTATGAGCAGGTTCACTTCTTCCAAAGGCAAGGCCCTCTATCTACTCCAGCAGCTTCATTTGCTTTTGGCGAACCCTCGTGCAAAAATGAACTGGCTCTAGTGGAATTTACTCCCAGAACGTCGTCGGATTGTCCAGCTGTGCACATTGAAGTCACGGGAACAATTGATGGGAAATTCGACTGCGGTTATCTGGTGACTGTAAAAGTGGGGTCGGACATCTTTAAAGGAGTACTGTACCATCCAGACCAACCGGATAGCAATGCACTTGTTTCTTACAATGAAAAATCTCGCCCTACCGGTCGGAGGAGGAGAAGAAAACGAAGAAAGGGAGACCCAAATTACCCAAAACCAAACAGGAGTGGATACAACTTTTTCTTCGCGGAAAAGCATTACAAACTCAAGTCTCTCTTCCCAAATAGAGAGAGGGAGTTTACGAAGATGATAGGAGAGTCTTGGAGCAATCTCAGTCCAGAAGAGAGGATGGTTTACCAGAACATAGGAGTGAAAGATAAAGAACGGTACAAGAGAGAATTGACAGAGTACAGAGAGAGAATGAGACCAGACCAACTACCGCTAGGGCATTAA 945 44.66 MSAPPPPAFSGTSEWSMEVQSKHYPEPLASHEEIIKDPAIFWDTLRRFHFLMSTKFMIPVIGGKELDLHVLYSEVTRKGGHEKVVAEKKWREVGNIFNFSPTTTSASFVLRKHYSSLLYYYEQVHFFQRQGPLSTPAASFAFGEPSCKNELALVEFTPRTSSDCPAVHIEVTGTIDGKFDCGYLVTVKVGSDIFKGVLYHPDQPDSNALVSYNEKSRPTGRRRRRKRRKGDPNYPKPNRSGYNFFFAEKHYKLKSLFPNREREFTKMIGESWSNLSPEERMVYQNIGVKDKERYKRELTEYRERMRPDQLPLGH 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12263604 12265781 - Conep07aG0197300.1 Cone7ag1916 442512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1916 314 SMART bright_3 36 127 IPR001606 GO:0003677(InterPro)
Cone7ag1916 314 SMART hmgende2 234 303 IPR009071 -
Cone7ag1916 314 Gene3D - 13 135 IPR036431 GO:0003677(InterPro)
Cone7ag1916 314 Gene3D High mobility group box domain 219 311 IPR036910 -
Cone7ag1916 314 SUPERFAMILY ARID-like 28 135 IPR036431 GO:0003677(InterPro)
Cone7ag1916 314 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677(InterPro)
Cone7ag1916 314 MobiDBLite consensus disorder prediction 208 240 - -
Cone7ag1916 314 MobiDBLite consensus disorder prediction 218 232 - -
Cone7ag1916 314 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 18 308 - -
Cone7ag1916 314 CDD HMG-box_AtHMGB9-like 235 301 - -
Cone7ag1916 314 SUPERFAMILY HMG-box 232 305 IPR036910 -
Cone7ag1916 314 SMART ARID_2 32 122 - -
Cone7ag1916 314 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677(InterPro)
Cone7ag1916 314 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677(InterPro)
Cone7ag1916 314 Pfam HMG (high mobility group) box 235 302 IPR009071 -
Cone7ag1916 314 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 235 302 IPR009071 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1298 Cone-Chr15:10148603 Cone7ag1916 Cone-Chr7:12263604 3.86E-58 dispersed
Cone7ag0393 Cone-Chr7:1752040 Cone7ag1916 Cone-Chr7:12263604 7.00E-78 dispersed
Cone17ag1432 Cone-Chr17:9780674 Cone7ag1916 Cone-Chr7:12263604 1.63E-140 wgd
Cone20ag0052 Cone-Chr20:254125 Cone7ag1916 Cone-Chr7:12263604 2.27E-138 wgd
Cone4ag1987 Cone-Chr4:13923663 Cone7ag1916 Cone-Chr7:12263604 3.06E-207 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46608 PF02496 ABA_WDS 3.50E-36 No_clan Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1916 - - - 0.0