Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1941 ATGAAAGGAGGTAAATCAAAGTCTGAGACGAAGAGAACCGACTCTAAACTTGCTGTGAATAAGAAAGGGGCAGCTGCAGGGAAGAAATCAAGCAAGAAGCCAGTGAAAGACCCTAACAAGCCCAAGCGACCAGCCAGTGCCTTCTTCGTTTTCATGGAGGAGTTCAGGAAGAAGTTTAACGAGGAGAATCCTCAGAATAAAGCGGTTTCTGCGGTTGGCAAGGCTGCTGGACAAAAGTGGAAGTCTATGTCTGATGCTGACAAGGCACCTTATGTTGCAAAGGCAGACAAAAGAAAAATTGAATATGAGAAGAACATGAAAGCCTATAACAAGAGACAGGCGGAGGGTGCGGATGCTGCTGAGGAAGGTGAAGAATCTGAGAAGTCAGTGTCTGAGGTAAATGATCAGGATGATGAAGATGATGGAAGCGAAGAGGAGGATGATGATGACGAGTAG 456 45.83 MKGGKSKSETKRTDSKLAVNKKGAAAGKKSSKKPVKDPNKPKRPASAFFVFMEEFRKKFNEENPQNKAVSAVGKAAGQKWKSMSDADKAPYVAKADKRKIEYEKNMKAYNKRQAEGADAAEEGEESEKSVSEVNDQDDEDDGSEEEDDDDE 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12386493 12387757 + Conep07aG0199900.1 Cone7ag1941 442537

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1941 151 Gene3D High mobility group box domain 36 114 IPR036910 -
Cone7ag1941 151 CDD HMG-box_AtHMGB1-like 42 102 - -
Cone7ag1941 151 MobiDBLite consensus disorder prediction 111 151 - -
Cone7ag1941 151 SMART hmgende2 40 111 IPR009071 -
Cone7ag1941 151 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 141 IPR031061 -
Cone7ag1941 151 MobiDBLite consensus disorder prediction 131 151 - -
Cone7ag1941 151 MobiDBLite consensus disorder prediction 1 44 - -
Cone7ag1941 151 Coils Coil 92 112 - -
Cone7ag1941 151 SUPERFAMILY HMG-box 28 115 IPR036910 -
Cone7ag1941 151 Pfam HMG (high mobility group) box 41 110 IPR009071 -
Cone7ag1941 151 MobiDBLite consensus disorder prediction 60 88 - -
Cone7ag1941 151 MobiDBLite consensus disorder prediction 111 130 - -
Cone7ag1941 151 MobiDBLite consensus disorder prediction 1 18 - -
Cone7ag1941 151 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 41 110 IPR009071 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1941 K25507 - - csv:101203891 187.193
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag1387 Cone-Chr19:9152124 Cone7ag1941 Cone-Chr7:12386493 1.15E-34 dispersed
Cone5ag0522 Cone-Chr5:2201994 Cone7ag1941 Cone-Chr7:12386493 1.03E-19 dispersed
Cone5ag1601 Cone-Chr5:11245769 Cone7ag1941 Cone-Chr7:12386493 8.51E-17 dispersed
Cone12ag0868 Cone-Chr12:7749914 Cone7ag1941 Cone-Chr7:12386493 1.96E-41 wgd
Cone17ag1458 Cone-Chr17:9894432 Cone7ag1941 Cone-Chr7:12386493 3.48E-55 wgd
Cone20ag0017 Cone-Chr20:128072 Cone7ag1941 Cone-Chr7:12386493 2.21E-14 wgd
Cone4ag2024 Cone-Chr4:14068094 Cone7ag1941 Cone-Chr7:12386493 3.67E-71 wgd
Cone7ag1941 Cone-Chr7:12386493 Cone8ag0896 Cone-Chr8:8722294 5.35E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g85 . Blo12g00851 . Bda03g00323 Bpe02g00306 Bpe04g00284 Bma04g00290 . . . Cma01g02021 Cma09g00049 Car01g01588 . . Cpe06g00019 . . . . . . . . . . . . . . . Cone4ag2024 Cone7ag1941 Cone17ag1458 . Lsi04g01812 Csa04g02709 . . . . Bda11g00975 . . . . . Sed01g2431 Cmo01g02078 Cmo09g00052 . . . Car09g00041 . . Bhi09g02874 Tan01g5116 Cmetu06g2583 . . Mch11g0052 . Cla11g01828 Cam11g1895 Cec11g1920 Cco11g1929 Clacu11g2059 Cmu11g1864 Cre11g2271 . . Chy07g00398 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002005 3 3 2 2 2 0 4 1 0 2 2 1 3 2 2 3 0 5 2 1 2 2 2 2 2 2 2 2 1 2 59
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46610 PF00270 DEAD 8.00E-28 CL0023 Cone TR