Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1942 ATGAAGCAGACAACAGACGGGAAACCTCCTCGGCACCTCTCTGTTATGCGACAAAGTGTAACCTCTGCAAACCTTCCTGGCCCTACTGGTTGGAGCTTGGATACTGGAACTGTTGAAACCAAGTCCCATGATGTCAAGACAGGATTTTCGCCTGTTTTCAGATCTGGAAGTTGTGCTGAAAGAGGACCTAAACAGTACATGGAGGATGAACACATTTGCATTGATGATCTCATTGAGCATATAGGTACAGCTGCAGGTCTCACATCACCCGGAGCTTTTTATGGGGTATTTGATGGCCACGGTGGGACAGATGCTGCGTTATTTGTCAGAAATAACATTGTTAGATTCGTAGTCGAGGACTCCTATTTTCCACTTTGCGTGAAGAAGGCGATTAAAGGTGCGTTTTTTAAAGCAGATTATGCATTTGCAGATGCTAGCTCGCTAGACATATCCTCCGGTACAACTGCCTTGACCACAATTATCTTAGGAAGGACAATGATAATTGCCAATGCAGGAGACTGTCGAGCTGTTCTGGGGAGACGGGGTAGAGCCATCGAGATGTCTAAGGATCACAAACCTGATTGCACATCTGAAAGAGTAAGGATCGAGAAACTTGGTGGCGTCATTTATGATGGCTACCTCAATGGGCAGTTGTCGGTTGCACGTGCCATAGGGGACTGGCATATGAAAGGTGCCAAGGGCACCTTATGCCCATTAAGTGCAGAGCCAGAGTTCCAGGAAATGCACTTGACTGAGGACGATGAGTTTTTAATAATGGGGTGCGATGGGCTATGGGATGTCATGAGCAGTCAATTTGCGGTTACAATGGCGAGGAGAGAACTCATTCTTCACAATGATCCCGAGCGATGCTCAAGAGAACTTGTAAGGGAGGCACTCAAGCGCAATACATGTGATAATTTAACTGTAATTGTGGTCTGTTTTTCAGCTGACCCTCCCCCTAGGATAGAGATACCTCAATGCCATGTACGGAGGAGTATATCTGCAGAGGGATTGAATTTATTGAAGGGTGTACTGGATTGCCATTCCAGGTATGATTAG 1059 46.18 MKQTTDGKPPRHLSVMRQSVTSANLPGPTGWSLDTGTVETKSHDVKTGFSPVFRSGSCAERGPKQYMEDEHICIDDLIEHIGTAAGLTSPGAFYGVFDGHGGTDAALFVRNNIVRFVVEDSYFPLCVKKAIKGAFFKADYAFADASSLDISSGTTALTTIILGRTMIIANAGDCRAVLGRRGRAIEMSKDHKPDCTSERVRIEKLGGVIYDGYLNGQLSVARAIGDWHMKGAKGTLCPLSAEPEFQEMHLTEDDEFLIMGCDGLWDVMSSQFAVTMARRELILHNDPERCSRELVREALKRNTCDNLTVIVVCFSADPPPRIEIPQCHVRRSISAEGLNLLKGVLDCHSRYD 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12392172 12394262 - Conep07aG0200000.1 Cone7ag1942 442538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1942 352 Pfam Protein phosphatase 2C 55 306 IPR001932 -
Cone7ag1942 352 Gene3D - 34 317 IPR036457 -
Cone7ag1942 352 ProSiteProfiles PPM-type phosphatase domain profile. 54 314 IPR001932 -
Cone7ag1942 352 FunFam Probable protein phosphatase 2C 22 38 317 - -
Cone7ag1942 352 SMART PP2C_4 44 312 IPR001932 -
Cone7ag1942 352 CDD PP2Cc 53 314 IPR001932 -
Cone7ag1942 352 ProSitePatterns PPM-type phosphatase domain signature. 93 101 IPR000222 GO:0043169(InterPro)
Cone7ag1942 352 SUPERFAMILY PP2C-like 47 315 IPR036457 -
Cone7ag1942 352 PANTHER PROTEIN PHOSPHATASE 2C 52 314 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1295 Cone-Chr12:9857607 Cone7ag1942 Cone-Chr7:12392172 4.28E-153 dispersed
Cone17ag0390 Cone-Chr17:1857864 Cone7ag1942 Cone-Chr7:12392172 5.52E-97 dispersed
Cone17ag1044 Cone-Chr17:7876242 Cone7ag1942 Cone-Chr7:12392172 2.10E-115 dispersed
Cone4ag1741 Cone-Chr4:12829972 Cone7ag1942 Cone-Chr7:12392172 9.06E-32 dispersed
Cone7ag1661 Cone-Chr7:11158108 Cone7ag1942 Cone-Chr7:12392172 2.10E-40 dispersed
Cone7ag1942 Cone-Chr7:12392172 Cone9ag0849 Cone-Chr9:4151370 2.66E-28 dispersed
Cone4ag2029 Cone-Chr4:14086911 Cone7ag1942 Cone-Chr7:12392172 3.01E-81 transposed
Cone4ag2028 Cone-Chr4:14086405 Cone7ag1942 Cone-Chr7:12392172 4.34E-31 wgd
Cone7ag1942 Cone-Chr7:12392172 Cone8ag0907 Cone-Chr8:8797371 8.91E-175 wgd
Cone7ag1942 Cone-Chr7:12392172 Cone8ag1336 Cone-Chr8:10770928 7.63E-156 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1942 K14803 - csv:101205355 581.637