Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1943 ATGGGCGGCAGGTGCGTTAACGCTGCCCCCTCCTCTCATCTGGTGCTGATGCTTCCATATTTCCCGATTCAACATGTGAGATTACACAAAACAACTCAAATTTCTTACAATGTTTGTACAACAACGACAAGTCTACTACACAACAACTATTTTGCCAAACTTGATTTCCGGTTTTTGGCTTTAAAGAAAAAGATCTATATTTTCTCTGTTCCAGATTCCACAAGTATAAGGAACCATGAGATATTTGTTGGAGTCCTGAATCGATACAAGGCCCTCATTAATCATCATAAGCAAAGAAAGTTATTTTTTTGGCTCTTCATTTATTCTCAATTGCTGTGTCATGGGTTTGGTGGGAATACTTCTGTGAGAGCGCCACCCCCTGTCATTAACATCGGAGCTCTTTTCTTGTTTGATTCCACCATTGGAAAAGTCACCAAGATTGCTATTGATGAAGCCGTGAAAGATGTCAATGCCAATTCCAGCATCCTCCCTGAAACAAAGCTTGTTATATCCATGCGAAATTCCAATTGCACTGGCTTTTACGGGATAGTCGAAGCCCAGCATTTCATGAAGACTGGAACGGTAGCCATCATAGGTCCTCAATCTTCTGTCGTTGCGCATACTATATCTCATGTTGCAAATGAACTCCAGGTTCCTCTATTGGCATTTGTGTCGACAGGCCCAACTCTCTCTTCCCTTCAGTTCCCTTTCTTTGTTCGCACGACCCAGAGTGATTTCTTCCAAATGACTGCTGTGGCTGAGTTTGCTGATCATTTTGGTTGGAAGACAGTCATTTCGATTTTCATCGATGATGATTATGGCCGGAATGGTGTTGCTGCATTAGAGGATGAGCTCTCTGAAAGGCAATGTAGAATTTCCTATATGGCGGGATCCAGCCCGGAATCTGGAGCTACTCGGGCTGACATTATTACTCTCCTTGTAAAGGTTTCAATGATGGAATCTCGAGTAGTTTTCTTTCGTGTTAATTCCAACTCGGGTTTCTTGGTTCTTACAGTGGCTAAATACCTTGGAATGATGGGTAATGGGTATGTATGGATAGCTACTGATTGGCTCTCCTCTGTTTTAGATTCTGCCTCACCTCTCTTTTCTGAAACCATGGATTCAATGGATTACTATAAAGTGACCTCGTTGGTTTGA 1158 42.31 MGGRCVNAAPSSHLVLMLPYFPIQHVRLHKTTQISYNVCTTTTSLLHNNYFAKLDFRFLALKKKIYIFSVPDSTSIRNHEIFVGVLNRYKALINHHKQRKLFFWLFIYSQLLCHGFGGNTSVRAPPPVINIGALFLFDSTIGKVTKIAIDEAVKDVNANSSILPETKLVISMRNSNCTGFYGIVEAQHFMKTGTVAIIGPQSSVVAHTISHVANELQVPLLAFVSTGPTLSSLQFPFFVRTTQSDFFQMTAVAEFADHFGWKTVISIFIDDDYGRNGVAALEDELSERQCRISYMAGSSPESGATRADIITLLVKVSMMESRVVFFRVNSNSGFLVLTVAKYLGMMGNGYVWIATDWLSSVLDSASPLFSETMDSMDYYKVTSLV 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12394537 12396401 + Conep07aG0200100.1 Cone7ag1943 442539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1943 385 Gene3D - 252 385 - -
Cone7ag1943 385 FunFam Glutamate receptor 244 377 - -
Cone7ag1943 385 Gene3D - 128 251 - -
Cone7ag1943 385 PANTHER OS06G0188250 PROTEIN 121 373 IPR015683 -
Cone7ag1943 385 SUPERFAMILY Periplasmic binding protein-like I 124 372 IPR028082 -
Cone7ag1943 385 Pfam Receptor family ligand binding region 146 374 IPR001828 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1294 Cone-Chr12:9853275 Cone7ag1943 Cone-Chr7:12394537 3.33E-77 wgd
Cone12ag0877 Cone-Chr12:7816693 Cone7ag1943 Cone-Chr7:12394537 5.11E-84 wgd
Cone4ag2030 Cone-Chr4:14092024 Cone7ag1943 Cone-Chr7:12394537 3.48E-160 wgd
Cone7ag1943 Cone-Chr7:12394537 Cone8ag0908 Cone-Chr8:8803388 5.63E-82 wgd
Cone7ag1943 Cone-Chr7:12394537 Cone8ag1337 Cone-Chr8:10774452 4.02E-35 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1943 K05387 - rcu:8273639 352.058