Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1948 ATGACTCGGCCCTTTAGATTCCTTGGTGTCATCAACTCGACGTCCACAGGGACCTCCCAGTCCCCCGCCTATGATTCTGACTTTGTCATAATACTGGCAGCTCTCCTTTGTGCTATAATCTGTGTTCTCGGCCTCATTGCCGTCGCACGGTGTGCCTGGCTCCACCGTATCTCCGTTGCTGATTCCACTCCTTCAATGCCTCTCTCAAACAAAGGCCTGAAGAAGAAGGTCCTAAGGTCCCTCCCAACGCTCACCTTCACAGCTGTTGAGTCCTCTGAATGCTCAGACTGTGCCATCTGCCTCACCCAGTTCTCCCTTGGCGATGAAATCCGAGTGCTTCCACACTGTAGGCACAGATTCCATGTGCTCTGCATCGATACCTGGTTTGGATCACATTCCTCCTGCCCTTCGTGCCGTCATATTTTAGGGATTGCTCGCTGTGATAAGTGTGGTGGTCTTACGACCAACAAATCCAGTATTGATGGACCTGATAATGAGATGAGAGTAAAAGAGAGAGAGGATGGTCATGCTCATACAAATACGAATAAGTTCTTACCTTAG 561 49.73 MTRPFRFLGVINSTSTGTSQSPAYDSDFVIILAALLCAIICVLGLIAVARCAWLHRISVADSTPSMPLSNKGLKKKVLRSLPTLTFTAVESSECSDCAICLTQFSLGDEIRVLPHCRHRFHVLCIDTWFGSHSSCPSCRHILGIARCDKCGGLTTNKSSIDGPDNEMRVKEREDGHAHTNTNKFLP 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12422298 12422959 + Conep07aG0200600.1 Cone7ag1948 442544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1948 186 MobiDBLite consensus disorder prediction 161 186 - -
Cone7ag1948 186 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 16 162 IPR052788 -
Cone7ag1948 186 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Cone7ag1948 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 143 IPR013083 -
Cone7ag1948 186 MobiDBLite consensus disorder prediction 163 179 - -
Cone7ag1948 186 Pfam Ring finger domain 96 139 IPR001841 -
Cone7ag1948 186 SUPERFAMILY RING/U-box 77 144 - -
Cone7ag1948 186 SMART ring_2 97 138 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag1449 Cone-Chr19:9420188 Cone7ag1948 Cone-Chr7:12422298 1.72E-30 dispersed
Cone12ag0881 Cone-Chr12:7847918 Cone7ag1948 Cone-Chr7:12422298 3.71E-50 wgd
Cone17ag1471 Cone-Chr17:9949472 Cone7ag1948 Cone-Chr7:12422298 2.44E-65 wgd
Cone20ag0007 Cone-Chr20:67139 Cone7ag1948 Cone-Chr7:12422298 2.06E-57 wgd
Cone4ag2034 Cone-Chr4:14120697 Cone7ag1948 Cone-Chr7:12422298 2.81E-44 wgd
Cone7ag1948 Cone-Chr7:12422298 Cone8ag0912 Cone-Chr8:8839713 7.91E-54 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1948 - - - 0.0