Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1950 ATGGAGAAAGGAACAACAGTGTCAGCGATGGAGGCCTTTGAAAAGCTAGAGAAAGTGGGGGAAGGGACGTACGGGAAGGTGTACAGGGCAAGAGAGAAGGCGACCGGGAAGATCGTCGCCCTCAAGAAGACTCGCCTCCACGAGGATGAGGAAGGCGTCCCTCCAACCACTCTTCGTGAGGTCTCCATCCTCCGAATGCTTTCCACAGATGCTCACATCGTCAAGCTGATGGATGTCAAGCAAGGTGAGAATAAAGAAGGAAAGAGAGTGCTGTATTTGGTGTTTGAATACATGGAGACGGATCTTAAGAAATTCATCAGGAGTTTCCGTCAATCCGGAGAAAACATTCCCGTTAACACTGTCAAGAGTCTGATGTTCCAGCTCTGCAAAGGGGTCGCCTTTTGCCATGGCCATGGGATCTTACACAGAGATCTGAAGCCTCACAATCTGCTGATGGACCGGAAGACAATGATGCTCAAGATTGCAGATCTTGGGCTTGCTCGAGCGTTTACTGTTCCCATTAAGAAGTATACACATGAGATATTGACCCTCTGGTACAGAGCTCCTGAAGTGCTCCTGGGCTCTACCCATTACTCAACTGCAGTAGATATGTGGTCGGTTGGCTGCATATTTGCTGAACTAGTAACCAAGCAAGCACTCTTCCCTGGGGATTCCGAGCTGCAACAACTCCTGCATATATTCAGGTTATTAGGAACTCCGAATGAAGAAATGTGGCCTGGAGTTAGCAAATTGATCAACTGGCATGAGTACCCTCAATGGAGCCCACAGAGCCTATCCACTGCCGTTCCTAACCTCGACGAGGAGGGCCTTCATCTCTTGTCAGAGATGTTGCAGTACGAACCCGCCAAGAGGATTTCAGCAAAGAAAGCCCTGGAACATCCTTACTTCGATCTTCTAAACAAAACATGTCTCTGA 936 48.72 MEKGTTVSAMEAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDEEGVPPTTLREVSILRMLSTDAHIVKLMDVKQGENKEGKRVLYLVFEYMETDLKKFIRSFRQSGENIPVNTVKSLMFQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMMLKIADLGLARAFTVPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVGCIFAELVTKQALFPGDSELQQLLHIFRLLGTPNEEMWPGVSKLINWHEYPQWSPQSLSTAVPNLDEEGLHLLSEMLQYEPAKRISAKKALEHPYFDLLNKTCL 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12440276 12442062 + Conep07aG0200800.1 Cone7ag1950 442546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1950 311 SMART serkin_6 13 303 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag1950 311 Gene3D Phosphorylase Kinase; domain 1 1 99 - -
Cone7ag1950 311 Gene3D Transferase(Phosphotransferase) domain 1 101 310 - -
Cone7ag1950 311 ProSiteProfiles Protein kinase domain profile. 13 303 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag1950 311 FunFam Cyclin-dependent kinase B2,2 9 99 - -
Cone7ag1950 311 FunFam Cyclin-dependent kinase 2 101 310 - -
Cone7ag1950 311 PANTHER CELL DIVISION PROTEIN KINASE 13 303 IPR050108 GO:0000082(PANTHER)|GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)|GO:0010033(PANTHER)|GO:0010389(PANTHER)|GO:0010468(PANTHER)|GO:0030332(PANTHER)
Cone7ag1950 311 SUPERFAMILY Protein kinase-like (PK-like) 8 304 IPR011009 -
Cone7ag1950 311 Pfam Protein kinase domain 13 303 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag1950 311 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524(InterPro)
Cone7ag1950 311 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0587 Cone-Chr12:5045694 Cone7ag1950 Cone-Chr7:12440276 2.17E-211 dispersed
Cone13ag1458 Cone-Chr13:10420415 Cone7ag1950 Cone-Chr7:12440276 1.42E-152 dispersed
Cone19ag0856 Cone-Chr19:6713578 Cone7ag1950 Cone-Chr7:12440276 1.16E-13 dispersed
Cone19ag1462 Cone-Chr19:9497191 Cone7ag1950 Cone-Chr7:12440276 1.06E-40 dispersed
Cone19ag1463 Cone-Chr19:9498318 Cone7ag1950 Cone-Chr7:12440276 1.31E-75 dispersed
Cone1ag1406 Cone-Chr1:56782156 Cone7ag1950 Cone-Chr7:12440276 1.83E-114 dispersed
Cone5ag0397 Cone-Chr5:1698040 Cone7ag1950 Cone-Chr7:12440276 1.29E-114 dispersed
Cone7ag1950 Cone-Chr7:12440276 Cone8ag0731 Cone-Chr8:7347584 8.96E-83 dispersed
Cone7ag1950 Cone-Chr7:12440276 Cone8ag0599 Cone-Chr8:5164999 1.86E-212 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83082 PF09377 SBDS_C 2.40E-26 CL0437 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1950 K07760 - csv:101208001 575.474