Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone8ag0012 | ATGGACCTTGCAGTTGTTCGCTGCACCGGAAAGAAAGCCATGGCCATTTCCCTTTCCGGAATGGTCATACATTTCATCATAGGAGCCTCCTTCTCATTTCTCACACACAAAAGAAACAGCGGCGTGAGCCAAGGAAACTTCATACTCTTCTTCTGCATTGCTCTCTCCATCACGGCCTTTCCTGTACTTGCCCAGATTCTCGCCGAGCTCAAACTCCTCGATACCGAGATTGGAAGAGTTTCATTATCAGCTGCATTTTTCAATGACATTGCAGCCTTTGTTACCTTCTACATATTCGCGGTTAGGCCGGCTGTTTCATGGATAATTAAGCAAAATCCGGAAGGAGAAAGCTTTAGTGAGTTTCAATTGTGTTTTACTGGGGTTATGATTTCGGGATTCATTACTGATGCCATGGGTATCCATTCGGTTTTTGGAGTTTTCATTTTCGGCCTTGTTATTCCAAACGGACCTCTTGGAGTTACTCTTATAGAAAAGCTCGAAGATTTTGTTTCGGGTCTTCTTCTTCCTCTCTTCTTTGCAATAAGTGTTCTCAAAACGGATATAGCTTCGATCACAGGAGCCGGGACTTGGGGTATTCTGATCCTCGTCATTGTTCTATCTTTCGTTGGAAAAGTCGGTGGGACCATTCTTGCCACCCGGTTTTATCAAATGCCATACCGTGAAGGAATGAGTCCTTTTTGGTTATGA | 708 | 44.07 | MDLAVVRCTGKKAMAISLSGMVIHFIIGASFSFLTHKRNSGVSQGNFILFFCIALSITAFPVLAQILAELKLLDTEIGRVSLSAAFFNDIAAFVTFYIFAVRPAVSWIIKQNPEGESFSEFQLCFTGVMISGFITDAMGIHSVFGVFIFGLVIPNGPLGVTLIEKLEDFVSGLLLPLFFAISVLKTDIASITGAGTWGILILVIVLSFVGKVGGTILATRFYQMPYREGMSPFWL | 235 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 121980 | 122768 | + | Conep08aG0001200.1 | Cone8ag0012 | 442561 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone8ag0012 | 235 | Pfam | Sodium/hydrogen exchanger family | 1 | 100 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) | |
| Cone8ag0012 | 235 | Pfam | Sodium/hydrogen exchanger family | 114 | 233 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) | |
| Cone8ag0012 | 235 | Gene3D | - | 1 | 94 | IPR038770 | - | |
| Cone8ag0012 | 235 | Gene3D | - | 95 | 233 | IPR038770 | - | |
| Cone8ag0012 | 235 | PANTHER | CATION/H + ANTIPORTER | 1 | 94 | IPR050794 | GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone8ag0012 | Cone-Chr8:121980 | Cone9ag0826 | Cone-Chr9:4014052 | 4.31E-56 | dispersed | |
| Cone12ag0018 | Cone-Chr12:165910 | Cone8ag0012 | Cone-Chr8:121980 | 5.58E-120 | wgd | |
| Cone6ag1271 | Cone-Chr6:10152369 | Cone8ag0012 | Cone-Chr8:121980 | 8.76E-88 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone8ag0012 | K26731 | - | cit:102623470 | 305.064 |