Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0029 ATGAACATTAACAACACTTGGCCGGATCTTGATCATATTGCCTCCGGCATTGATGAAGAACTTCATGATCATGATCATAATTTCCTACTTCCTTCTCCCCAACTTCACTTTGATTTTCTTTGGCCTACCTGCAATAATACCTCTCTAATTCAACCCCATCATAGTTTACCTTCCTCATCTTCAAGCCATGTTCCAACCTTATTCCATTTTGGACATCAATCAGAAATCCTCCATCGTGTGGTGGGGAGGAATGAGGATCAAGATAAGGAAGAAGAAGAAGAAGATAAAGATCATGAAGAAGATTCGGAAGAAGAAGAGCTTGGCGCCATGAAGGAGATGATGTTCAAGATTTCCGCAATGCAGCCGGTAGATATCGATCCCGCTACGCTCAGAAAACCGAAGCGAAGGAACGTATGGATAAGCGACGACCCCCAGAGCGTGGCCGCCCGTCTCAGGAGAGAGAGAATAAGCGAGAAAGTCCGTATTCTCCAAAGACTTGTTCCCGGAGGAACAAAGATGGACACGGCTTCCATGTTAGATGAAGCGGTCCGTTATGTGAAGTTTCTGAAGCGACACATCCGTCTCTTACAATCGAATCATCGACACCACTGTAATAATGATGGTATCACCTCCGTCGGGCCCGGATCCACTCCCATCCCAAACTGGCCGTTTAGAGCACCTCAACAAGTGAACGGCTCGGTTGACGTTAGAGCCTCCACCTCTACTGAGCCGTCAGCCGCCCATTTGGATGGAAAAATCATGGGGTTTAATTAA 774 46.64 MNINNTWPDLDHIASGIDEELHDHDHNFLLPSPQLHFDFLWPTCNNTSLIQPHHSLPSSSSSHVPTLFHFGHQSEILHRVVGRNEDQDKEEEEEDKDHEEDSEEEELGAMKEMMFKISAMQPVDIDPATLRKPKRRNVWISDDPQSVAARLRRERISEKVRILQRLVPGGTKMDTASMLDEAVRYVKFLKRHIRLLQSNHRHHCNNDGITSVGPGSTPIPNWPFRAPQQVNGSVDVRASTSTEPSAAHLDGKIMGFN 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 191897 192670 - Conep08aG0002900.1 Cone8ag0029 442578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0029 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 140 189 IPR011598 GO:0046983(InterPro)
Cone8ag0029 257 MobiDBLite consensus disorder prediction 79 105 - -
Cone8ag0029 257 FunFam BHLH transcription factor 143 207 - -
Cone8ag0029 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 200 IPR036638 GO:0046983(InterPro)
Cone8ag0029 257 SMART finulus 146 195 IPR011598 GO:0046983(InterPro)
Cone8ag0029 257 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 48 234 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0029 257 MobiDBLite consensus disorder prediction 87 105 - -
Cone8ag0029 257 CDD bHLH_AtIND_like 141 199 - -
Cone8ag0029 257 Pfam Helix-loop-helix DNA-binding domain 149 190 IPR011598 GO:0046983(InterPro)
Cone8ag0029 257 Gene3D - 144 207 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0123 Cone-Chr12:659774 Cone8ag0029 Cone-Chr8:191897 1.19E-37 dispersed
Cone4ag1582 Cone-Chr4:12098263 Cone8ag0029 Cone-Chr8:191897 5.07E-36 dispersed
Cone7ag1368 Cone-Chr7:9902948 Cone8ag0029 Cone-Chr8:191897 1.43E-36 dispersed
Cone8ag0029 Cone-Chr8:191897 Cone8ag0130 Cone-Chr8:670288 3.62E-37 dispersed
Cone12ag0027 Cone-Chr12:214122 Cone8ag0029 Cone-Chr8:191897 3.89E-133 wgd
Cone8ag0029 Cone-Chr8:191897 Cone9ag1243 Cone-Chr9:9107450 1.13E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46612 PF11910 NdhO 7.20E-13 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0029 - - - 0.0