Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0030 ATGACCCTCACCACTAAGATTAAGAAATCATCATATAACCCCTCCTCCCCTCCCTTTGCCTCATTCCCGTTTCTCAAATCCAGATTCCTCTTCCTTTCCATGGCCGCCTCCCTCTTCTTCCTCTCCTTCCTCCTCTTCCTCTCCTCCTCCGCCGACCTCCATGTCTCCGCCATTCACAAACTCAAACCCAATCCCAGATTGCCCTCCCCTACAGTTAAACGTCACGATCAAGCTCCCATTTCCCGCTCCGAGATCCAGCAGGCCTGTAAAGGTACCCGTTTTCCCGGCCCATGCGAATCCTCCCTGGCCCAACCCAACCGGGTCCCTCCCAACCCCTCCGCCCTACAGATCATCCAATCCGCTGTCGGAGTCTCCACCGACAATCTCAACACCGCCAAATCCATGATCAACGATATCCTAGACTCGTCCGCGGGGAATCGGAACCGCTCCAGCGCCGCCAAGATCTGCCTCGAGGTCCTGCACAATTCCGAGTACCGGATCTCCCTAGCTAATGACTCTCTGCCGCGTGGAAGGACCAAGGACGCCCGGACATTTATGAGCGCCGCGCTCGTGTTCCAGTACGACTGCTGGTCCGCCCTCAAGTACGTGAACGACACGCAGCTGATTAACCAGACGATGTCGTTTCTCGACTCATTGCTCTCGCTTTCCAGCAACGCGCTTAGCATGATGCTCGCGTACGACACCGCGGGGAACGATACGGCGTCGTGGGGCCCACCTAAAACGGAGCGCGACGGGTTCTGGGAGGTTGGCGGGTCGGATGACACAGCTTCCGGGTTGAGTTTCGACGGTGGGTTCCCGTCCAAGATGAAGGCGGACGTTACGGTTTGTAAGGATGGGAGTGACGGCTGTTACAAGTCGGTGCAGGAAGCCGTTGATGCCGCGCCAGATAACGGTTGGGCGCGAAGGTTCGTGATTTACATAAAGGAGGGGGTTTATGAGGAGACCGTTAGGGTGCCGTTAGAGAAGAGAAACGTGGTATTTTTGGGAGATGGGATGGGCAAAACCGTCATTACTGGGTCGAGAAATGTGGGCCAGCCTGGTACGACTACCTACGATTCAGCTACCGTCGGAGTTCTTGGCGATGGATTCATGGCAAGTGGCCTCACATTCCAAAACACGGCAGGACCTGATGCTCACCAAGCGGTTGCCTTCAGATCAGACAGTGATCTATCAGTTATTGAAAGCTGTGAATTCTTGGGCAATCAAGATACTCTTTATGCTCACACTCTTCGCCAGTTCTACAAATCCTGTAGTATAGAAGGCAATGTCGATTTCATTTTCGGAAACGCAGCTTCGATATTCCAGGATTGCCATATCTTGGTCCGTCCACGTCAGCTCAAGCCTGAACATGGAGAAAACAGTGTCATCACAGCTCATGGTAGAACCGACCCAGCCCAATCAACTGGCTTCGTGTTCCAAAACTGCTTGATAAACGGGACTGAGGAGTACATGGCCTTGTACCGGAGCAAACCTCAAGTGCATAAAAACTATCTAGGGAGGCCATGGAAGGAATATTCCCGGACGGTTTTTGTAAATAGTAAACTTGAAGAGCTTATTACTCTGGAAGGATGGTTGCCTTGGAGCGGGGATTTTGCATTGAAGACTCTGTTTTATGGGGAACATGGGAATACCGGCCTTGGATCGGACCGGAGCAAGAGGGTCAGCTGGAGCAGCCTAATTCCGGATGACCATGTAATGAGTTACTCGGTCCAGAATTTCATTCAAGGAGACCAATGGATTCCTTCATCATCATCATCTAAAGATGTTAGAAGGGAGGAGGCAAGAGGGAATCATAAGAAGATACACAAAGGGTGA 1836 52.29 MTLTTKIKKSSYNPSSPPFASFPFLKSRFLFLSMAASLFFLSFLLFLSSSADLHVSAIHKLKPNPRLPSPTVKRHDQAPISRSEIQQACKGTRFPGPCESSLAQPNRVPPNPSALQIIQSAVGVSTDNLNTAKSMINDILDSSAGNRNRSSAAKICLEVLHNSEYRISLANDSLPRGRTKDARTFMSAALVFQYDCWSALKYVNDTQLINQTMSFLDSLLSLSSNALSMMLAYDTAGNDTASWGPPKTERDGFWEVGGSDDTASGLSFDGGFPSKMKADVTVCKDGSDGCYKSVQEAVDAAPDNGWARRFVIYIKEGVYEETVRVPLEKRNVVFLGDGMGKTVITGSRNVGQPGTTTYDSATVGVLGDGFMASGLTFQNTAGPDAHQAVAFRSDSDLSVIESCEFLGNQDTLYAHTLRQFYKSCSIEGNVDFIFGNAASIFQDCHILVRPRQLKPEHGENSVITAHGRTDPAQSTGFVFQNCLINGTEEYMALYRSKPQVHKNYLGRPWKEYSRTVFVNSKLEELITLEGWLPWSGDFALKTLFYGEHGNTGLGSDRSKRVSWSSLIPDDHVMSYSVQNFIQGDQWIPSSSSSKDVRREEARGNHKKIHKG 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 195245 198192 + Conep08aG0003000.1 Cone8ag0030 442579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0030 611 SMART PMEI_2 80 229 IPR006501 GO:0004857(InterPro)
Cone8ag0030 611 FunFam Probable pectinesterase/pectinesterase inhibitor 51 83 232 - -
Cone8ag0030 611 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 83 229 IPR035513 -
Cone8ag0030 611 Gene3D Invertase/pectin methylesterase inhibitor family protein 79 232 IPR035513 -
Cone8ag0030 611 CDD PMEI-like_3 88 207 - -
Cone8ag0030 611 Gene3D - 273 595 IPR012334 -
Cone8ag0030 611 PANTHER PECTINESTERASE 34 589 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cone8ag0030 611 SUPERFAMILY Pectin lyase-like 276 589 IPR011050 -
Cone8ag0030 611 Pfam Pectinesterase 279 584 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cone8ag0030 611 MobiDBLite consensus disorder prediction 586 611 - -
Cone8ag0030 611 FunFam Pectinesterase 273 596 - -
Cone8ag0030 611 Pfam Plant invertase/pectin methylesterase inhibitor 84 229 IPR006501 GO:0004857(InterPro)
Cone8ag0030 611 NCBIfam pectinesterase inhibitor domain 78 229 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0030 Cone-Chr8:195245 Cone9ag0410 Cone-Chr9:1895925 6.73E-95 dispersed
Cone12ag0028 Cone-Chr12:217607 Cone8ag0030 Cone-Chr8:195245 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0030 - - - 0.0