Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0034 ATGGTGAGGAATGATTTATACATCACTATTCCAAGCTTATTCAGGTGTCCGATCTCGCTTGACGTGATGAAATCTCCTGTGAGCTTGTGCACCGGAGTCACCTACGACCGCTCCAGCATACAACGGTGGCTTGACGGCGGCAACAACACGTGTCCGGCCACTATGCAGGTGCTACAGAGCAAGGACTTCGTACCTAACCGCAACCTCCAGCGCCTGATTCAGATATGGTCTGACACAGTCCGGCAGCGTGCCGACTCGTCCGAATCGAATGATAATGACTCACCGCCTGTACTTTCACATGACCAAATCGTGGACTTCGTCGTAGAAGTAGAAACCAGCTCGAGCGAGAGTAAGTGCTACGATTCTCTCTCGAATCTTGTCTGTTTTGCAGAAGAGTCAGAGGAGAATCGAAATTTCCTTGCAAAAATTGACGGAATAGTACCGATCCTTGCTGATTTTCTTGCCATTGTTGATGATGGAGCTTGTCGAGACATTAGATTTGTCGAGCTTGTAGTTAGGATTTTGGATTTAATGCTAAATGAAATCCAAGAGCGGGAGCAATTAATCAGCTCGATTTTGAAAGGCAATCGCGATTGCTTGGCCTCTCTGATTCTCGTTCTGAAGCAAGGAAGCGACGAATCACAAACAGCTTCTGTTAGAATGATAGAGTATATCGCCGTGGATTCAGAATCGAAGCTGTTGATCACTGAGAAAAAGGGTCTGCTACTGCAATTAATCAAACTAATCAGTCCAGAAAAGGATCCGATACTAATCAAATCGGTCTTATCGTGCTTAATCATAATTTCAACGACGAAACGTGCGAAAATCAAACTGATCCATCTCGAAGCAGTAAAATCGCTAACAAAGCTGTTACTGGTATCAAATATGAGCGTCTCGATTAACGAGAAGGTTCTTAAGCTTCTTGAAATGGTGTCCTCTGTGAAAGAAGGACGGTTACAGATTTCCGACGACTCGATCTGCATTCCGGCAGTAGTTCAGAAGCTACTGAAGGTATCGAATTCGGTTACAGAACATGGTGTTACGATTATTTGGAGCGTTTGCTGTTTGTTACGTGATCAGAAATCTTTAGAGGCGGTTATGGAATGTAACGGGGTGACCAAGATACTGCTGATCATGCAGAGCAATTGTTCTCCTTTGATCAAGCAAATGGCTGCTGATTTGCTCAAGACTTTTCGGGTTAGTTCTAAAAAATCCTGCTTATCTATTTATGATACCAACACAACACATATCATGCACTGTTGA 1263 43.94 MVRNDLYITIPSLFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDGGNNTCPATMQVLQSKDFVPNRNLQRLIQIWSDTVRQRADSSESNDNDSPPVLSHDQIVDFVVEVETSSSESKCYDSLSNLVCFAEESEENRNFLAKIDGIVPILADFLAIVDDGACRDIRFVELVVRILDLMLNEIQEREQLISSILKGNRDCLASLILVLKQGSDESQTASVRMIEYIAVDSESKLLITEKKGLLLQLIKLISPEKDPILIKSVLSCLIIISTTKRAKIKLIHLEAVKSLTKLLLVSNMSVSINEKVLKLLEMVSSVKEGRLQISDDSICIPAVVQKLLKVSNSVTEHGVTIIWSVCCLLRDQKSLEAVMECNGVTKILLIMQSNCSPLIKQMAADLLKTFRVSSKKSCLSIYDTNTTHIMHC 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 211847 213109 - Conep08aG0003400.1 Cone8ag0034 442583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0034 420 PANTHER WDSAM1 PROTEIN 7 417 IPR045185 GO:0061630(InterPro)
Cone8ag0034 420 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone8ag0034 420 CDD RING-Ubox_PUB 11 63 IPR045210 -
Cone8ag0034 420 Gene3D - 186 413 IPR011989 -
Cone8ag0034 420 Pfam U-box domain 10 78 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone8ag0034 420 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Cone8ag0034 420 SMART Ubox_2 13 76 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone8ag0034 420 SUPERFAMILY RING/U-box 5 78 - -
Cone8ag0034 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 93 IPR013083 -
Cone8ag0034 420 SUPERFAMILY ARM repeat 99 401 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag1324 Cone-Chr7:9687474 Cone8ag0034 Cone-Chr8:211847 6.89E-37 dispersed
Cone8ag0034 Cone-Chr8:211847 Cone8ag1127 Cone-Chr8:9943296 4.50E-24 dispersed
Cone12ag0032 Cone-Chr12:228996 Cone8ag0034 Cone-Chr8:211847 7.75E-266 wgd
Cone6ag1295 Cone-Chr6:10383394 Cone8ag0034 Cone-Chr8:211847 4.09E-184 wgd
Cone8ag0034 Cone-Chr8:211847 Cone9ag1248 Cone-Chr9:9156608 9.81E-178 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0034 - - - 0.0