Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0044 ATGGCCGATGCAGAGGATATTCAGCCCCTTGTCTGTGACAATGGAACTGGGATGGTGAAGGCTGGATTTGCCGGGGATGATGCTCCCAGAGCTGTTTTCCCCAGTATTGTGGGTAGACCCCGACACACTGGTGTGATGGTTGGAATGGGCCAGAAAGATGCTTATGTTGGTGATGAAGCCCAGTCTAAAAGAGGTATTCTTACATTGAAGTATCCCATTGAGCACGGTATTGTCAGCAATTGGGATGACATGGAAAAGATCTGGCATCACACTTTCTACAATGAGCTCCGTGTTGCTCCTGAAGAACACCCAGTGCTTCTCACCGAAGCTCCTCTCAATCCAAAAGCTAACAGAGAAAAGATGACTCAGATTATGTTCGAAACATTTAATGTCCCAGCTATGTATGTGGCCATCCAGGCCGTCTTATCCCTCTATGCCAGTGGTCGTACAACTGGTATCGTGCTGGATTCTGGTGATGGTGTGAGTCACACTGTACCAATCTACGAGGGTTATGCTCTCCCCCATGCCATCCTCCGTCTCGACCTTGCTGGTCGTGATCTTACTGATGCTTTGATGAAGATCCTCACAGAGAGAGGGTACATGTTCACCACCACAGCGGAGCGGGAAATTGTCCGCGACATGAAGGAGAAGCTTGCATATGTTGCTCTTGACTTTGAGCAAGAGCTTGAGACTGCTAAGAGCAGCTCCTCTGTTGAGAAGAACTATGAACTGCCCGACGGGCAAGTCATCACAATCGGAGCTGAGAGATTCCGTTGCCCAGAGGTCCTCTTCCAGCCATCTCTCATCGGAATGGAAGCTGCTGGAATCCACGAGACTACCTATAACTCCATCATGAAGTGTGATGTGGATATCAGAAAGGACTTGTATGGAAACATTGTTCTCAGTGGTGGTTCAACTATGTTCCCTGGTATTGCAGATAGGATGAGCAAAGAGATCACAGCCCTTGCTCCTAGCAGCATGAAGATCAAGGTTGTGGCGCCACCTGAAAGGAAATACAGTGTCTGGATCGGAGGGTCGATCCTTGCATCCCTCAGCACCTTCCAGCAGATGTGGATTTCAAAGGGTGAGTACGATGAGTCCGGTCCATCCATCGTCCACATGAAGTGCTTCTGA 1134 49.12 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDFEQELETAKSSSSVEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHMKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 248787 251800 + Conep08aG0004400.1 Cone8ag0044 442593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0044 377 FunFam Actin, alpha skeletal muscle 3 179 - -
Cone8ag0044 377 FunFam Actin, muscle 182 273 - -
Cone8ag0044 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cone8ag0044 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cone8ag0044 377 FunFam Major actin 261 340 - -
Cone8ag0044 377 Gene3D - 140 340 - -
Cone8ag0044 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cone8ag0044 377 PANTHER ACTIN 8 369 IPR004000 -
Cone8ag0044 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cone8ag0044 377 FunFam Putative actin-related protein 5 341 369 - -
Cone8ag0044 377 Pfam Actin 5 377 IPR004000 -
Cone8ag0044 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cone8ag0044 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Cone8ag0044 377 Gene3D - 10 371 - -
Cone8ag0044 377 PRINTS Actin signature 238 254 IPR004000 -
Cone8ag0044 377 PRINTS Actin signature 51 62 IPR004000 -
Cone8ag0044 377 PRINTS Actin signature 63 85 IPR004000 -
Cone8ag0044 377 PRINTS Actin signature 142 161 IPR004000 -
Cone8ag0044 377 PRINTS Actin signature 28 37 IPR004000 -
Cone8ag0044 377 PRINTS Actin signature 117 130 IPR004000 -
Cone8ag0044 377 SMART actin_3 7 377 IPR004000 -
Cone8ag0044 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0934 Cone-Chr12:8148048 Cone8ag0044 Cone-Chr8:248787 3.98E-28 dispersed
Cone3ag0336 Cone-Chr3:1708645 Cone8ag0044 Cone-Chr8:248787 2.68E-270 dispersed
Cone8ag0044 Cone-Chr8:248787 Cone9ag1250 Cone-Chr9:9202192 7.46E-277 dispersed
Cone8ag0044 Cone-Chr8:248787 Cone8ag0048 Cone-Chr8:258605 7.78E-279 proximal
Cone12ag0933 Cone-Chr12:8147612 Cone8ag0044 Cone-Chr8:248787 3.37E-34 transposed
Cone5ag1153 Cone-Chr5:5193356 Cone8ag0044 Cone-Chr8:248787 1.04E-71 transposed
Cone12ag0043 Cone-Chr12:262455 Cone8ag0044 Cone-Chr8:248787 1.29E-277 wgd
Cone6ag1317 Cone-Chr6:10591365 Cone8ag0044 Cone-Chr8:248787 9.06E-230 wgd
Cone8ag0044 Cone-Chr8:248787 Cone9ag1264 Cone-Chr9:9364250 1.41E-233 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0044 K10355 - rcu:8264754 754.207