Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0082 ATGGCTTCTCCTTCTTCTTCCAATCTTATCTTCAACATTACAAACTCCTCAACATATCTCTTAATTCTTCTTCTTCCTCTTCTATTACTAACAACTCCATCATACGCACAAGATCCGAATTCTCCTATCCCAACAAAAACCCTCTGCAAATCCACCCCAGATTCTGCCTACTGCTTATCCATACTTGGAAACAACTCCACCTCAAACCTCTACACCCATGGCCGTTTCTCGATCCAACGTGCATTAGAAAAATCCCGTAATTTCTTAGACAAAATAAACAGTGCACTCCAAGATCCCAACAATACAACCCTGCAAATTAACGCTCTCCAAGATTGCCTTTCTCTAGCTCAAACCAACGTAGACTTTTTATCAAACACCTTGCTTGCAATAAACAAGACCAATAAAATCTTCTCATTTTCACAAGCAGATGATTATCAAACCTTACTCTCAGCTATTCTGACCAATCAAGAAACATGTCTAGACGGCATAAAGGATTCAAACACTGATTTAGCAGACAATAACGATCTTCTCTCACTAATTCATGACAGTGAGAAACTGTACAGTCTTTCTCTATCTCTGTTTACAAAAGCATGGGTGCCTGGAAACAGAAGCAGAGGAAACGACTTGCCTGTGAAAAGACACGTTAACTTCCGGAAGGGAAGGCTGCCGTTGAAAATGTCGGCCGGGAACAGAGCAATCTATGACTGGGCGGTGAGCAGGCGTGGCCGTAGACTGCTTCAAGCACCGGACGAGCCAGTGGTGGTGAACGGGATCGTGGTGGTGAGTTTGGACGGGACGGGGAATTACACGAATATTACCAGCGCCATAAACGCCGCGCCTAAGAACTCCTTGCCCGAAAATGGATACTTCTTGATTTACGTGACGGCGGGAGTTTATGCAGAGTATGTAAACGTTCCGTCGAATAAGAAGTACGTGTTGATGATCGGCGACGGAATTAACCAGACGGTAATTACTGGAAATAATAGCGTTGTTGATGGCTCTACTACTTTCAATAGTGCTACCCTCATTGTATCAGGAACAGGATTTGTGGGAGCGGGCCTAACAGTAAGAAACACAGCCGGACCCTCCAAAGGCCAAGCCGTAGCTTTAAGATCCTCAGCCGATTTGTCAACTTTCTATTCTTGTAGTTTTGAAGGCTACCAGGACACACTCTACACCCACTCTCTCCGTCAATTCTACAGAGAATGCGACATTTACGGCACCGTCGATTTCATATTCGGAAATGCAGCAGTTGTTCTTCAAAACTGCAACCTCTACGCAAGACAACCTAATCGAGGACAATTTAATGCTCTAACAGCACAAGGCAAAACCGACCCGAATCAAAACACGGGCACTGCGATCCAAAACTGTACAATAAAGGCAGCTAGTGACTTGATTTCTAGTAATTTTACGACCAAGAGTTACCTTGGGAGACCATGGAAGCTATATTCTACAACGGTTTATATGCAGTCTTTCATCGACAGTTTGATCGATCCTTCTGGGTGGAATATCTGGTCGGGTGATTACGCATTGAACACATCATTTTATGGTGAGTTTGGAAATATAGGGCCAGGATCAAATACTAGTCAGAGGGTTTCCTGGAGCTATCAGATTAATGAGACAATTGCTGGGACTTATACGGTTTCGAGCTTTTTGGTAGGGGATCAATGGCTGCCACAAACTAGTGTTCCTTATACTGGAGGTCTGATTTGA 1713 43.9 MASPSSSNLIFNITNSSTYLLILLLPLLLLTTPSYAQDPNSPIPTKTLCKSTPDSAYCLSILGNNSTSNLYTHGRFSIQRALEKSRNFLDKINSALQDPNNTTLQINALQDCLSLAQTNVDFLSNTLLAINKTNKIFSFSQADDYQTLLSAILTNQETCLDGIKDSNTDLADNNDLLSLIHDSEKLYSLSLSLFTKAWVPGNRSRGNDLPVKRHVNFRKGRLPLKMSAGNRAIYDWAVSRRGRRLLQAPDEPVVVNGIVVVSLDGTGNYTNITSAINAAPKNSLPENGYFLIYVTAGVYAEYVNVPSNKKYVLMIGDGINQTVITGNNSVVDGSTTFNSATLIVSGTGFVGAGLTVRNTAGPSKGQAVALRSSADLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNLYARQPNRGQFNALTAQGKTDPNQNTGTAIQNCTIKAASDLISSNFTTKSYLGRPWKLYSTTVYMQSFIDSLIDPSGWNIWSGDYALNTSFYGEFGNIGPGSNTSQRVSWSYQINETIAGTYTVSSFLVGDQWLPQTSVPYTGGLI 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 430323 432181 - Conep08aG0008300.1 Cone8ag0082 442631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0082 570 SMART PMEI_2 39 193 IPR006501 GO:0004857(InterPro)
Cone8ag0082 570 NCBIfam pectinesterase inhibitor domain 16 192 IPR006501 GO:0004857(InterPro)
Cone8ag0082 570 Pfam Plant invertase/pectin methylesterase inhibitor 46 193 IPR006501 GO:0004857(InterPro)
Cone8ag0082 570 Gene3D Invertase/pectin methylesterase inhibitor family protein 45 196 IPR035513 -
Cone8ag0082 570 FunFam Pectinesterase 253 569 - -
Cone8ag0082 570 Gene3D - 254 569 IPR012334 -
Cone8ag0082 570 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 46 196 IPR035513 -
Cone8ag0082 570 CDD PMEI-like_3 47 198 - -
Cone8ag0082 570 ProSitePatterns Pectinesterase signature 2. 405 414 IPR033131 -
Cone8ag0082 570 SUPERFAMILY Pectin lyase-like 255 568 IPR011050 -
Cone8ag0082 570 PANTHER PECTINESTERASE 26 560 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cone8ag0082 570 Pfam Pectinesterase 259 555 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag0780 Cone-Chr7:4988409 Cone8ag0082 Cone-Chr8:430323 3.27E-117 dispersed
Cone8ag0082 Cone-Chr8:430323 Cone9ag0410 Cone-Chr9:1895925 2.33E-116 dispersed
Cone8ag0082 Cone-Chr8:430323 Cone20ag0959 Cone-Chr20:6855559 1.03E-212 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0082 K01051 - mdm:103410907 659.833