Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0084 ATGGCAAGTGGATTTGGGGAATCAACAACAAGCGTACCTCCTCTTCAAAACCCATCTTGTTCGACCAGTGGTAACACTGATGCTGGCGATTTTGAATGCAATATCTGCCTCGACCTAGCTCAAGATCCGATCGTCACTCTCTGTGGGCACCTATTTTGCTGGCCTTGTCTGTATAGGTGGCTCCATCACCACTCACATTCTCAAGAATGCCCTGTTTGTAAAGCCCTAGTTGAAGAGGAAAAGCTAGTTCCTCTCTATGGAAGAGGGAAAAACCAGACTGATCCTAGATCGAAGTCTTATCCAGGAATGGAAATTCCTCGAAGGCCTGCAGGCCAAAGGCCCGAAACCGCTCCTCCAACAGCTTCAAACCAATTTTCCAATTATGGGTTTGGGTTTATGGGCGGATTTGTTCCAACAGCATCTGCAAGGATTGGTAACTTCAGTTTGGCCTTTGGCGGCTTGATCCCTTCTCTGTTTAATATTCACTTTCAGGGGTTTTCAGATGCTACTGTTTATGGGACAACTTCTGGTTTTCCTTATGCGCGTAATACGTTTCATGGCGGCCATGCTCATGGCTTTCCTCAACCAGTTAATCGCGGAGAGCAGGCCAATAATGTTTTGAAGAATCTTCTTTTGCTGATTGGGGTGTTTGTGATCCTTGCTCTTCTTTGTTGGTAG 678 46.17 MASGFGESTTSVPPLQNPSCSTSGNTDAGDFECNICLDLAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKALVEEEKLVPLYGRGKNQTDPRSKSYPGMEIPRRPAGQRPETAPPTASNQFSNYGFGFMGGFVPTASARIGNFSLAFGGLIPSLFNIHFQGFSDATVYGTTSGFPYARNTFHGGHAHGFPQPVNRGEQANNVLKNLLLLIGVFVILALLCW 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 438507 440137 + Conep08aG0008500.1 Cone8ag0084 442633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0084 225 Pfam Zinc finger, C3HC4 type (RING finger) 32 73 - -
Cone8ag0084 225 ProSiteProfiles Zinc finger RING-type profile. 33 74 IPR001841 -
Cone8ag0084 225 SMART ring_2 33 73 IPR001841 -
Cone8ag0084 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 95 IPR013083 -
Cone8ag0084 225 ProSitePatterns Zinc finger RING-type signature. 48 57 IPR017907 -
Cone8ag0084 225 CDD RING-HC_AtRMA-like 31 75 - -
Cone8ag0084 225 MobiDBLite consensus disorder prediction 1 23 - -
Cone8ag0084 225 SUPERFAMILY RING/U-box 29 86 - -
Cone8ag0084 225 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 12 217 IPR045103 GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:0071712(PANTHER)
Cone8ag0084 225 MobiDBLite consensus disorder prediction 87 120 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0524 Cone-Chr13:5531349 Cone8ag0084 Cone-Chr8:438507 1.39E-30 dispersed
Cone17ag1319 Cone-Chr17:9339349 Cone8ag0084 Cone-Chr8:438507 4.85E-63 dispersed
Cone19ag0476 Cone-Chr19:3914770 Cone8ag0084 Cone-Chr8:438507 1.06E-32 dispersed
Cone20ag0156 Cone-Chr20:683521 Cone8ag0084 Cone-Chr8:438507 3.49E-61 dispersed
Cone4ag1888 Cone-Chr4:13476940 Cone8ag0084 Cone-Chr8:438507 5.41E-95 dispersed
Cone6ag0139 Cone-Chr6:682408 Cone8ag0084 Cone-Chr8:438507 1.14E-26 dispersed
Cone7ag1799 Cone-Chr7:11780316 Cone8ag0084 Cone-Chr8:438507 3.94E-94 dispersed
Cone8ag0084 Cone-Chr8:438507 Cone9ag0165 Cone-Chr9:727323 4.87E-27 dispersed
Cone12ag0082 Cone-Chr12:434239 Cone8ag0084 Cone-Chr8:438507 1.30E-162 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0084 K10666 - csv:101205026 371.318