Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0088 ATGGGAATAGCAACACCACCACCGCCGTCACTGCTGCCACCATCATCGGTTTTCTCCAACGCAAAGGATCATCATCAATACAACAACAACAGCAACAACTTCTCCTCCAATTCGATTCCTGTTTCACCCGATAAGTCGGAATATTCTTCTTCTCCGAATTCTATGTCCCATCAAGATCACCAGCATCACCACTATCATCATCACAACATCTACAGCAACAACAACTTCTCAAACAATAATGGCGGGTTCGGGAGATCCTCGCCATCGCCAACCGAACATCACCATCAACACCACATAGCACAGCAGATCCGGAGGGAGAAGTTGAGAGTCCAAGGATATCACGAGCCACCGCCACCACTGGTGGGGCTAGACGAGGAGCCAGGCGGGCTCCATGTATATGAAACCGGAGGGATGTTATCCGAAATGTTCAATTTCAATCCTGGAGGAAATCCTGGCACTGAATTATTAGACCCGCCGTTAACGGAATCTGGACTGGCAGGTTTTCGGCCAAGACCGGCAACTACCGGGGCTAATGAGTGGTATGGAATTTCTAGACCTAATCAACATCAGCAACAGATTCCGGGAATTAATGCTGATTCGGCAGCTGCCATGCAACTTTTTCTAATGAACCCGCCACCAAGATCGCCACCGTCATCTCCACCACCACAACAACATGCTCTGAATTCAAGTAATTCCTCTAGTACCCTCCACATGCTCCTTCCAAATCCTACTACAAATAATTCTCTCCAGGGAGGGGCTTTTGGTCAATTCGCTGCTTGGGAAGGAGGAGGTGGTGGTGGTAATAATCCTCATGATCATCATCAAATTGGAGGTCTTTCATTGTCACTATCATCTTCATTGCAACAATTGGAGGCAGCAAAAGCTGAAGAACTAAGAATTGGAGATGGAGAATTGTTGTACTACAATGGAGGTTCTTCTTCACATCACCATCAAAATCAAGTTCATGTGGGGTTTGGTGGGCCCACATCGGTATCTCTAGGAGTGGTCAATGTGCTAAGGAATTCAAAGTATGTGAAAGCAGCTCAAGAATTGTTGGAAGAATTCTGTAGCGTTGGTAGGGGTCAAATCAAGAAGAACAAACTTCTTGCTCGAAACAATTCAAACCCTAGCTCCAACACTAATAATCTTGCCACCACCACAACCACCGGAAACACCACCATGGCTGGTGGCTCGTCCGGTTCTTCAAAGAATATTCACCCTCCCTTGTCAGCAGCTGATAGGATTGAGCATCAGCGGAGGAAGGTCAAACTCTTATCAATGCTTGATGAGGTAGATCGAAGATTCAACCACTATTGCGAGCAGATGCAGATGGTAGTGAATTCGTTCGATATAGTGATGGGATTTGGATCAGCAGTGCCGTACACTGCACTAGCTCAGAAAGCAATGTCAAGGCATTTTAGGTGCCTAAAGGATGCGATCTTAGCCGAATTGAAACACAGTTGCGAGCTGTTGGGCGAGAAAGATGCATCCGGCACAAGTGGCATAACTAAAGGAGAGACCCCTAGGCTTAAGTTGCTTGAACAAAGCTTAAGGCAGCAACGAGCGTTTAATCAAATGGGAATGATGGAACAAGAAGCTTGGAGGCCGCAAAGGGGCTTGCCTGAACGCTCTGTCAATATCTTGAGGGCTTGGCTTTTCGAGCATTTCCTTCATCCGTATCCAAGCGATGCAGATAAGCATCTGTTGGCTCGACAGACTGGGTTATCGAGAAATCAGGTTTCAAACTGGTTCATCAATGCGAGGGTTAGATTGTGGAAGCCCATGGTAGAAGAAATGTACCAACAGGAGGCCGAAGAACAGGAACCAACGGAAGAAGAGGAAAGAGATCATGATGATCATGAATTAATAGATCACCATCATCGTCATGCCTTTGCACAAACTTCAATATTACCGTCCACGTCAGCAACTGCAACCACTCAACTACCGTCAGCACCACCTCCAACCGCTGGCGCAACAACCACCATGAGATCAATATCAAATATGAACGCAGGATCAGTGCTTGAAATCGACCCTTCACTCATTGCAATGATCAATAGATCACAAACCTTCTCGGGAAACCAAGCAAAGCAGCAGCAAAAACCACCGCCACCAGTCACCGCCACCTCCACCACCGCCAATGTGGCGGCGCCACAAGGCCACATCATGTCACAGTGTTTTTCTCCTCACCCTCGGGATCATCATCTGTCAGCTGACGCTCTTCAGCACGACACGTGTAGACGTGGCAGCAAACTTTCAGCTGATTACAACAATCATGTTGGGACCACCACCACCACCATTACTACAACCTCAGCTGGAAATAATCATGCTCATGACAGCGTGGGACCTACACTCATAAGGTTCGGGACCACCACGGCTGGTGAAGTGTCACTCACATTAGGGTTACGCCATGCTGGAAACATGCCGGAGAAAAGTTCTTCTTTCTCAGTTAGAGACTTCGGAGGGTGTTAG 2469 47.47 MGIATPPPPSLLPPSSVFSNAKDHHQYNNNSNNFSSNSIPVSPDKSEYSSSPNSMSHQDHQHHHYHHHNIYSNNNFSNNNGGFGRSSPSPTEHHHQHHIAQQIRREKLRVQGYHEPPPPLVGLDEEPGGLHVYETGGMLSEMFNFNPGGNPGTELLDPPLTESGLAGFRPRPATTGANEWYGISRPNQHQQQIPGINADSAAAMQLFLMNPPPRSPPSSPPPQQHALNSSNSSSTLHMLLPNPTTNNSLQGGAFGQFAAWEGGGGGGNNPHDHHQIGGLSLSLSSSLQQLEAAKAEELRIGDGELLYYNGGSSSHHHQNQVHVGFGGPTSVSLGVVNVLRNSKYVKAAQELLEEFCSVGRGQIKKNKLLARNNSNPSSNTNNLATTTTTGNTTMAGGSSGSSKNIHPPLSAADRIEHQRRKVKLLSMLDEVDRRFNHYCEQMQMVVNSFDIVMGFGSAVPYTALAQKAMSRHFRCLKDAILAELKHSCELLGEKDASGTSGITKGETPRLKLLEQSLRQQRAFNQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQEAEEQEPTEEEERDHDDHELIDHHHRHAFAQTSILPSTSATATTQLPSAPPPTAGATTTMRSISNMNAGSVLEIDPSLIAMINRSQTFSGNQAKQQQKPPPPVTATSTTANVAAPQGHIMSQCFSPHPRDHHLSADALQHDTCRRGSKLSADYNNHVGTTTTTITTTSAGNNHAHDSVGPTLIRFGTTTAGEVSLTLGLRHAGNMPEKSSSFSVRDFGGC 822
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 468633 475470 + Conep08aG0008900.1 Cone8ag0088 442637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0088 822 CDD homeodomain 534 595 IPR001356 GO:0003677(InterPro)
Cone8ag0088 822 SUPERFAMILY Homeodomain-like 536 601 IPR009057 -
Cone8ag0088 822 Pfam Associated with HOX 338 480 IPR006563 -
Cone8ag0088 822 MobiDBLite consensus disorder prediction 15 56 - -
Cone8ag0088 822 ProSiteProfiles 'Homeobox' domain profile. 531 594 IPR001356 GO:0003677(InterPro)
Cone8ag0088 822 MobiDBLite consensus disorder prediction 224 252 - -
Cone8ag0088 822 MobiDBLite consensus disorder prediction 70 89 - -
Cone8ag0088 822 MobiDBLite consensus disorder prediction 90 104 - -
Cone8ag0088 822 FunFam BEL1-like homeodomain protein 4 537 599 - -
Cone8ag0088 822 Pfam Homeobox KN domain 551 590 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone8ag0088 822 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 243 616 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone8ag0088 822 MobiDBLite consensus disorder prediction 370 408 - -
Cone8ag0088 822 SMART prehox3 333 482 IPR006563 -
Cone8ag0088 822 MobiDBLite consensus disorder prediction 600 619 - -
Cone8ag0088 822 SMART HOX_1 534 598 IPR001356 GO:0003677(InterPro)
Cone8ag0088 822 Gene3D - 537 599 - -
Cone8ag0088 822 MobiDBLite consensus disorder prediction 370 406 - -
Cone8ag0088 822 MobiDBLite consensus disorder prediction 690 710 - -
Cone8ag0088 822 MobiDBLite consensus disorder prediction 601 615 - -
Cone8ag0088 822 MobiDBLite consensus disorder prediction 208 252 - -
Cone8ag0088 822 MobiDBLite consensus disorder prediction 1 104 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0290 Cone-Chr12:1567141 Cone8ag0088 Cone-Chr8:468633 1.19E-81 dispersed
Cone18ag0268 Cone-Chr18:1291051 Cone8ag0088 Cone-Chr8:468633 1.87E-50 dispersed
Cone3ag0372 Cone-Chr3:1878156 Cone8ag0088 Cone-Chr8:468633 1.63E-57 dispersed
Cone6ag0798 Cone-Chr6:4056769 Cone8ag0088 Cone-Chr8:468633 1.89E-75 dispersed
Cone8ag0088 Cone-Chr8:468633 Cone8ag0284 Cone-Chr8:1635714 5.55E-85 dispersed
Cone12ag0085 Cone-Chr12:466788 Cone8ag0088 Cone-Chr8:468633 0 wgd
Cone8ag0088 Cone-Chr8:468633 Cone9ag1286 Cone-Chr9:9611690 2.04E-116 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46617 PF03936 Terpene_synth_C 4.50E-101 CL0613 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0088 - - - 0.0