Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0112 ATGCGCTGGTTAAGTAATATTTCATTTTCTTCTTCTGCTTCTTCTTCTTCTTCGTCGTCGTCTAGCGGAAAATCACGGTGGCGGAAGATCAGTGGCCGCGGCGGAGCTGGCAGCGAGGATCAGATTTGTCGAGGAGGTGGCTGGCGGTGTAGCATCAGGAAATGTTCGTGCCAGAGAAAGCTGAGATCTTCAGATCCAGAAAGTTCTCGTTCTTCTTTCTCTAACCCGTCGGAGCTTATACCTCCATCGCAATCTCCGAAGAAATTTGACCTAGCCGTTCCGCTTCCATTGCCCGAGTTATCGTCCACTTCTCGATCTAAAGATGGCTTATCCAGCAATGGAACAAGTCCGCTTCCCTCTCCGAAGGACGGGCCAGGTAAATCCCAGGAAGAACGATATAGAGATCGAGACCCAGTCGGAGCTCCGTTTAAGATTGGGGATGGCACCTTGTCCAACATTCGTGTAAAGAGCGTGTTTACTTGCAAAGAGAGGAGGGTGGAGAAGGATGAAGAAGGTACAAGCTTGAGGGGAATTCGTCAAGATCAAGACAATTTAAAGGCCGGAATTGAGACCTGGAGTACTCCGAGTAGTCCCTTTGCACGTTCACTTTCTCATTGTTATTACGTGATTCCAAATAAAAATGAGGTCTGGTCTGCTCCTGAATTATCACCTTCGCCTGTTATTCCCGGAACTATTCCTCCTTCGTTTTATGATCACCCCACCTCGTTTCGGACTAGCACTTCTCCAATTCAAAGCCCATCCATAATAAGTCCCCGCCAAGACACTCGAAGCTCGACCAGACCTAGTTCTCCTTTGCATCCTAGACTATCTGTTGATATACCCACTCTATTGTGCAAAAATAACGGCCAGTTTTATGTTTGTCGCTTGCCTCTTCCTCCTGGAGCATCCTCACATTCAACATCTGCTCCTATCTCGCCTCGACAAGAGCCGATATCGATGAAAAATCAGTGGCAGAAAGGGAAACTTATAGGCCGTGGCACTTTTGGGAGTGTCTATGTTGCAAGCAACAGAGCGACAGGGGCTTTATGTGCAATGAAGGAAGTTGAATTAGTTCCCGATGATCCGAAATCTGCAGAGTGTATAAAGCAGTTAGAGCAGGAAATTAAAGTTCTGAGCCAGCTGAAGCATCCTAATATTGTCCAGTATTATGGTAGTGAAATAGTCGATGATCGGTTTTTAATATACTTGGAGTATGTCCATCCTGGTTCGATTAGTATATATGTACGAGAACATTGCGGGGCCATCACAGAATGTGTTATTCGGAACTTTACTCGACATATCCTCTCAGGGTTGGCTTACTTGCACAGTACAAAGACATTACATCGGGACATCAAAGGGGCTAATTTGCTGGTAGATTCAAGTGGAGTTGTCAAGCTATCTGATTTCGGGATGGCCAAACATCTCACTGGTCAGGCAGGCAGTCTCTCTCTGAAGGGAAGTCCATATTGGATGGCTCCAGAGCTCATGCAAGCTGTAAGGCAGAAAGACGACAACTCTGAGCTTGCCCTTGCTGTCGATATATGGAGTCTTGGCTGTACTATCATTGAAATGTTTACTGGAAAACCTCCTTGGAGCGAGTATGAAGGGGCAGCAGCCATGTTTAAGGTTATGAGAGATACACCATCTATACCAGATTCATTGTCATGTGAGGGAAAGGATTTTCTAAGATGCTGCTTTCAAAGAAACCCGGCAGACAGGCCTTCTGCTCTCATTTTGCTTGAACATCGATTTTTGAAAATGTCTCTGCCTTTAGATGTTCCCTCCCCTTCTTAA 1794 45.99 MRWLSNISFSSSASSSSSSSSSGKSRWRKISGRGGAGSEDQICRGGGWRCSIRKCSCQRKLRSSDPESSRSSFSNPSELIPPSQSPKKFDLAVPLPLPELSSTSRSKDGLSSNGTSPLPSPKDGPGKSQEERYRDRDPVGAPFKIGDGTLSNIRVKSVFTCKERRVEKDEEGTSLRGIRQDQDNLKAGIETWSTPSSPFARSLSHCYYVIPNKNEVWSAPELSPSPVIPGTIPPSFYDHPTSFRTSTSPIQSPSIISPRQDTRSSTRPSSPLHPRLSVDIPTLLCKNNGQFYVCRLPLPPGASSHSTSAPISPRQEPISMKNQWQKGKLIGRGTFGSVYVASNRATGALCAMKEVELVPDDPKSAECIKQLEQEIKVLSQLKHPNIVQYYGSEIVDDRFLIYLEYVHPGSISIYVREHCGAITECVIRNFTRHILSGLAYLHSTKTLHRDIKGANLLVDSSGVVKLSDFGMAKHLTGQAGSLSLKGSPYWMAPELMQAVRQKDDNSELALAVDIWSLGCTIIEMFTGKPPWSEYEGAAAMFKVMRDTPSIPDSLSCEGKDFLRCCFQRNPADRPSALILLEHRFLKMSLPLDVPSPS 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 570627 574515 + Conep08aG0011400.1 Cone8ag0112 442661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0112 597 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 14 586 IPR050538 -
Cone8ag0112 597 MobiDBLite consensus disorder prediction 239 274 - -
Cone8ag0112 597 ProSitePatterns Protein kinases ATP-binding region signature. 330 353 IPR017441 GO:0005524(InterPro)
Cone8ag0112 597 SUPERFAMILY Protein kinase-like (PK-like) 309 590 IPR011009 -
Cone8ag0112 597 SMART serkin_6 324 585 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone8ag0112 597 MobiDBLite consensus disorder prediction 239 272 - -
Cone8ag0112 597 Pfam Protein kinase domain 325 585 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone8ag0112 597 MobiDBLite consensus disorder prediction 67 82 - -
Cone8ag0112 597 MobiDBLite consensus disorder prediction 99 119 - -
Cone8ag0112 597 ProSiteProfiles Protein kinase domain profile. 324 585 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone8ag0112 597 Gene3D Transferase(Phosphotransferase) domain 1 320 594 - -
Cone8ag0112 597 MobiDBLite consensus disorder prediction 125 141 - -
Cone8ag0112 597 FunFam Mitogen-activated protein kinase kinase kinase 5 321 596 - -
Cone8ag0112 597 MobiDBLite consensus disorder prediction 1 145 - -
Cone8ag0112 597 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1555 Cone-Chr4:11959759 Cone8ag0112 Cone-Chr8:570627 2.85E-140 dispersed
Cone6ag1281 Cone-Chr6:10240385 Cone8ag0112 Cone-Chr8:570627 7.36E-101 dispersed
Cone7ag1397 Cone-Chr7:10015837 Cone8ag0112 Cone-Chr8:570627 4.27E-149 dispersed
Cone8ag0019 Cone-Chr8:140232 Cone8ag0112 Cone-Chr8:570627 9.15E-106 dispersed
Cone8ag0112 Cone-Chr8:570627 Cone8ag0976 Cone-Chr8:9169745 3.17E-64 dispersed
Cone12ag0109 Cone-Chr12:567623 Cone8ag0112 Cone-Chr8:570627 9.30E-36 wgd
Cone6ag1378 Cone-Chr6:11065392 Cone8ag0112 Cone-Chr8:570627 1.81E-145 wgd
Cone8ag0112 Cone-Chr8:570627 Cone9ag1239 Cone-Chr9:9076150 8.78E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83091 PF01202 SKI 2.00E-40 CL0023 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0112 - - - 0.0