Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone8ag0130 | ATGGATGTTGACATGATTAACATGATGATTCAAATGGAAACATTCCCAGATGATCATGATCAAGTGGTACTCCAGAACCTCTACAGTGAGTTTTCTAGTGGCGGCCCCACCATGTTCCACCACCTGAATGTAGAACCGAATGTCTTATCGAACCCTACTCCGCCTTCATCCTCTTCATTTATAACCAATCCGATGATTGACCCGACTTCTGCTACCACTACTGCTGCTACTGCTACTTCATTATCACTATCGAGAAATATTAGTTCGTTCGATCTGAGAAACAATTCAATGGCGGCAATGAGGGAGATGATATTTCGAATTGCGGCAATGCAACCGATACATATCGACCCGGAATCAGTGAAACCACCAAAAAGGCGGAACGTGAAGATTTCTAAGGACCCACAAAGCGTAGCGGCCAGGCATAGAAGGGAGAGGATTAGTGAGCGGATAAGGATTTTGCAGAGATTGGTCCCAGGTGGAACTAATATGGATACGGCATCGATGCTTGATGAAGCTATTCATTACGTCAAGTTTTTGAAGAAACAAGTTCAAACATTGGAACAAGTTGGGGTTATTAACACTAGGCCGGGGTTAGGGTTTTCCGGAACGGGGATGAATTGTTCAAACAACGTTAACTATTCTTCGGCATTGTTGAAAGCTAATTATAATCAACAATCTCAACTTGTGGGATCCTTGCAAATGCGTAGGTGA | 711 | 43.32 | MDVDMINMMIQMETFPDDHDQVVLQNLYSEFSSGGPTMFHHLNVEPNVLSNPTPPSSSSFITNPMIDPTSATTTAATATSLSLSRNISSFDLRNNSMAAMREMIFRIAAMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTNMDTASMLDEAIHYVKFLKKQVQTLEQVGVINTRPGLGFSGTGMNCSNNVNYSSALLKANYNQQSQLVGSLQMRR | 236 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 670288 | 670998 | + | Conep08aG0013200.1 | Cone8ag0130 | 442679 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone8ag0130 | 236 | SMART | finulus | 136 | 185 | IPR011598 | GO:0046983(InterPro) | |
| Cone8ag0130 | 236 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 130 | 179 | IPR011598 | GO:0046983(InterPro) | |
| Cone8ag0130 | 236 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 52 | 224 | IPR045843 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cone8ag0130 | 236 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 134 | 189 | IPR036638 | GO:0046983(InterPro) | |
| Cone8ag0130 | 236 | Pfam | Helix-loop-helix DNA-binding domain | 139 | 180 | IPR011598 | GO:0046983(InterPro) | |
| Cone8ag0130 | 236 | FunFam | BHLH transcription factor | 133 | 196 | - | - | |
| Cone8ag0130 | 236 | Gene3D | - | 129 | 192 | IPR036638 | GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone8ag0029 | Cone-Chr8:191897 | Cone8ag0130 | Cone-Chr8:670288 | 3.62E-37 | dispersed | |
| Cone8ag0130 | Cone-Chr8:670288 | Cone9ag1243 | Cone-Chr9:9107450 | 4.43E-35 | dispersed | |
| Cone12ag0123 | Cone-Chr12:659774 | Cone8ag0130 | Cone-Chr8:670288 | 2.98E-137 | wgd | |
| Cone4ag1582 | Cone-Chr4:12098263 | Cone8ag0130 | Cone-Chr8:670288 | 7.86E-54 | wgd | |
| Cone7ag1368 | Cone-Chr7:9902948 | Cone8ag0130 | Cone-Chr8:670288 | 5.03E-54 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 46620 | PF12315 | DA1-like | 9.60E-102 | CL0126 | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone8ag0130 | - | - | - | 0.0 |