Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0130 ATGGATGTTGACATGATTAACATGATGATTCAAATGGAAACATTCCCAGATGATCATGATCAAGTGGTACTCCAGAACCTCTACAGTGAGTTTTCTAGTGGCGGCCCCACCATGTTCCACCACCTGAATGTAGAACCGAATGTCTTATCGAACCCTACTCCGCCTTCATCCTCTTCATTTATAACCAATCCGATGATTGACCCGACTTCTGCTACCACTACTGCTGCTACTGCTACTTCATTATCACTATCGAGAAATATTAGTTCGTTCGATCTGAGAAACAATTCAATGGCGGCAATGAGGGAGATGATATTTCGAATTGCGGCAATGCAACCGATACATATCGACCCGGAATCAGTGAAACCACCAAAAAGGCGGAACGTGAAGATTTCTAAGGACCCACAAAGCGTAGCGGCCAGGCATAGAAGGGAGAGGATTAGTGAGCGGATAAGGATTTTGCAGAGATTGGTCCCAGGTGGAACTAATATGGATACGGCATCGATGCTTGATGAAGCTATTCATTACGTCAAGTTTTTGAAGAAACAAGTTCAAACATTGGAACAAGTTGGGGTTATTAACACTAGGCCGGGGTTAGGGTTTTCCGGAACGGGGATGAATTGTTCAAACAACGTTAACTATTCTTCGGCATTGTTGAAAGCTAATTATAATCAACAATCTCAACTTGTGGGATCCTTGCAAATGCGTAGGTGA 711 43.32 MDVDMINMMIQMETFPDDHDQVVLQNLYSEFSSGGPTMFHHLNVEPNVLSNPTPPSSSSFITNPMIDPTSATTTAATATSLSLSRNISSFDLRNNSMAAMREMIFRIAAMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTNMDTASMLDEAIHYVKFLKKQVQTLEQVGVINTRPGLGFSGTGMNCSNNVNYSSALLKANYNQQSQLVGSLQMRR 236
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 670288 670998 + Conep08aG0013200.1 Cone8ag0130 442679
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0130 236 SMART finulus 136 185 IPR011598 GO:0046983(InterPro)
Cone8ag0130 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 179 IPR011598 GO:0046983(InterPro)
Cone8ag0130 236 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 52 224 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0130 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 134 189 IPR036638 GO:0046983(InterPro)
Cone8ag0130 236 Pfam Helix-loop-helix DNA-binding domain 139 180 IPR011598 GO:0046983(InterPro)
Cone8ag0130 236 FunFam BHLH transcription factor 133 196 - -
Cone8ag0130 236 Gene3D - 129 192 IPR036638 GO:0046983(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0029 Cone-Chr8:191897 Cone8ag0130 Cone-Chr8:670288 3.62E-37 dispersed
Cone8ag0130 Cone-Chr8:670288 Cone9ag1243 Cone-Chr9:9107450 4.43E-35 dispersed
Cone12ag0123 Cone-Chr12:659774 Cone8ag0130 Cone-Chr8:670288 2.98E-137 wgd
Cone4ag1582 Cone-Chr4:12098263 Cone8ag0130 Cone-Chr8:670288 7.86E-54 wgd
Cone7ag1368 Cone-Chr7:9902948 Cone8ag0130 Cone-Chr8:670288 5.03E-54 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46620 PF12315 DA1-like 9.60E-102 CL0126 Cone TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0130 - - - 0.0