Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag0138 ATGTGGGATCTGAACGACTCGCCTGATTGGAGACGAGACGATGAATCGGAGGGCTGCTCTTCACCCAAGACTGCTTCAATCGACGGTGATGATGAGAAAGGAAAACGACGCGGGTCTGTTTCCAATTCCAGCTCTTCGGTAGTTATTTTCGAAGATGATCAAGATGGATCCGATGAAGATCAGGCCGCCGCCGACGTTAGAAGACTTGTTAAGCAGCGGAGCAACAACGGTAGGCTGCTCGGCTTCTCGGATACAGGCCCGCCGGTCACCCGGAAATTTTTCCCGGTTGGTGGGCCCGAGGAAGTTGGAATGGGCCCAATCCCTATGATGGATGTTGATCCAAGTTTCGGCGGCGGCGATGATGGTACTGAAGGTGTTACGTTCCCTCGGGCTCACTGGGTTGGAGTCAAATTCTCTCATTCCGAGCCGCTGGGTGGCCCCAAGGCGGCGGTTCAAGAGATTTCTCAGCCCATTAAGAAGAGCCGGCGAGGCCCGAGGTCTCGAAGCTCCCAATATCGAGGCGTTACGTTTTACCGGAGGACCGGCCGGTGGGAGTCTCACATATGGGATTGTGGGAAACAAGTGTATCTTGGTGGATTTGACACTGCGCATGCAGCTGCTCGTGCATATGATAGGGCAGCCATTAAGTTCCGAGGAATGGAGGCAGACATTAACTTCAGCATCAAAGACTACGAAGATGATTTGAAACAGATGAGCAATTTGACAAAGGAAGAGTTTGTACATGTACTCCGACGGCAAAGCACGGGGTTTCCTAGAGGAAGCTCCAAGTATAGAGGGGTGACCTTGCATAAGTGTGGAAGATGGGAAGCTAGAATGGGCCAATTTTTAGGAAAAAAGTACGTTTATTTGGGTTTGTTTGATACCGAGATTGAAGCTGCAAGGGCTTATGACAAAGCTGCCATTAAATGTAATGCCAGGGAAGCAGTCACCAACTTCGATCCAAGCATCTACGATGCCGAGCTCAATATTAATGCAACTGAATCTTCAAGAAATGAAGGTAATTATGAACACAATCTAGATTTGAGTTTAGGAAATTCAAGCTCAAAACAAGACAAGCAAAGTTCTTCAATAAATGTTCATGAGGGATATTATAATAGGCCTGATCAGGTAAATAATGGAAAAGATAAGCAGCTTGAGACTGATACCATGCAGCTCTTAAGCCAAACCCATCTTCAATATCATGACGGTAATCAAAGATATGAAAACTTCATTAGATGGCCTGGACATTCCCATTTACCTCAATATCCACAAAATAATCAAATTGAGATCTTAAGCAGCAGCAATGGATTAGGAGGAAGATCAGGAGAAGGAAATGATCATGAACTTTCGTTGTCTATGAACATCAGTGATCATCGACATGAACATTGGCAAATATCTGGTTCTTCTCAAATGTTTGCAAATGCTGCAGCATCATCAGGATTCCCACCACCATCAGTACCACATGAGATCAGACGCACCCAAAATTGGCTGCACAAAAATGAGTTTCACTAA 1512 46.03 MWDLNDSPDWRRDDESEGCSSPKTASIDGDDEKGKRRGSVSNSSSSVVIFEDDQDGSDEDQAAADVRRLVKQRSNNGRLLGFSDTGPPVTRKFFPVGGPEEVGMGPIPMMDVDPSFGGGDDGTEGVTFPRAHWVGVKFSHSEPLGGPKAAVQEISQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGMEADINFSIKDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNAREAVTNFDPSIYDAELNINATESSRNEGNYEHNLDLSLGNSSSKQDKQSSSINVHEGYYNRPDQVNNGKDKQLETDTMQLLSQTHLQYHDGNQRYENFIRWPGHSHLPQYPQNNQIEILSSSNGLGGRSGEGNDHELSLSMNISDHRHEHWQISGSSQMFANAAASSGFPPPSVPHEIRRTQNWLHKNEFH 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 727322 730591 - Conep08aG0014000.1 Cone8ag0138 442687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag0138 503 ProSiteProfiles AP2/ERF domain profile. 263 320 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0138 503 MobiDBLite consensus disorder prediction 336 369 - -
Cone8ag0138 503 MobiDBLite consensus disorder prediction 336 381 - -
Cone8ag0138 503 FunFam AP2-like ethylene-responsive transcription factor 262 322 - -
Cone8ag0138 503 CDD AP2 262 322 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0138 503 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 63 386 - -
Cone8ag0138 503 SMART rav1_2 171 233 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0138 503 SMART rav1_2 263 326 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0138 503 MobiDBLite consensus disorder prediction 1 19 - -
Cone8ag0138 503 FunFam AP2-like ethylene-responsive transcription factor 170 229 - -
Cone8ag0138 503 ProSiteProfiles AP2/ERF domain profile. 171 227 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0138 503 Pfam AP2 domain 262 310 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0138 503 Pfam AP2 domain 171 220 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0138 503 Gene3D AP2/ERF domain 170 229 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0138 503 Gene3D AP2/ERF domain 262 321 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag0138 503 MobiDBLite consensus disorder prediction 1 64 - -
Cone8ag0138 503 MobiDBLite consensus disorder prediction 144 171 - -
Cone8ag0138 503 SUPERFAMILY DNA-binding domain 170 228 IPR016177 GO:0003677(InterPro)
Cone8ag0138 503 SUPERFAMILY DNA-binding domain 262 322 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0265 Cone-Chr10:1265019 Cone8ag0138 Cone-Chr8:727322 5.61E-108 dispersed
Cone1ag0696 Cone-Chr1:6470469 Cone8ag0138 Cone-Chr8:727322 2.09E-115 dispersed
Cone1ag1335 Cone-Chr1:56459580 Cone8ag0138 Cone-Chr8:727322 3.74E-61 dispersed
Cone3ag0291 Cone-Chr3:1509147 Cone8ag0138 Cone-Chr8:727322 2.40E-110 dispersed
Cone5ag0321 Cone-Chr5:1359024 Cone8ag0138 Cone-Chr8:727322 1.19E-61 dispersed
Cone5ag1204 Cone-Chr5:5461638 Cone8ag0138 Cone-Chr8:727322 2.77E-118 dispersed
Cone8ag0138 Cone-Chr8:727322 Cone6ag1392 Cone-Chr6:11213338 2.49E-10 dispersed
Cone12ag0139 Cone-Chr12:721303 Cone8ag0138 Cone-Chr8:727322 2.28E-285 wgd
Cone6ag1405 Cone-Chr6:11297736 Cone8ag0138 Cone-Chr8:727322 1.64E-139 wgd
Cone8ag0138 Cone-Chr8:727322 Cone9ag1333 Cone-Chr9:10006464 4.33E-150 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46622 PF14009 DUF4228 1.20E-27 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag0138 K09284 - rcu:8260999 514.998