Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone8ag0138 | ATGTGGGATCTGAACGACTCGCCTGATTGGAGACGAGACGATGAATCGGAGGGCTGCTCTTCACCCAAGACTGCTTCAATCGACGGTGATGATGAGAAAGGAAAACGACGCGGGTCTGTTTCCAATTCCAGCTCTTCGGTAGTTATTTTCGAAGATGATCAAGATGGATCCGATGAAGATCAGGCCGCCGCCGACGTTAGAAGACTTGTTAAGCAGCGGAGCAACAACGGTAGGCTGCTCGGCTTCTCGGATACAGGCCCGCCGGTCACCCGGAAATTTTTCCCGGTTGGTGGGCCCGAGGAAGTTGGAATGGGCCCAATCCCTATGATGGATGTTGATCCAAGTTTCGGCGGCGGCGATGATGGTACTGAAGGTGTTACGTTCCCTCGGGCTCACTGGGTTGGAGTCAAATTCTCTCATTCCGAGCCGCTGGGTGGCCCCAAGGCGGCGGTTCAAGAGATTTCTCAGCCCATTAAGAAGAGCCGGCGAGGCCCGAGGTCTCGAAGCTCCCAATATCGAGGCGTTACGTTTTACCGGAGGACCGGCCGGTGGGAGTCTCACATATGGGATTGTGGGAAACAAGTGTATCTTGGTGGATTTGACACTGCGCATGCAGCTGCTCGTGCATATGATAGGGCAGCCATTAAGTTCCGAGGAATGGAGGCAGACATTAACTTCAGCATCAAAGACTACGAAGATGATTTGAAACAGATGAGCAATTTGACAAAGGAAGAGTTTGTACATGTACTCCGACGGCAAAGCACGGGGTTTCCTAGAGGAAGCTCCAAGTATAGAGGGGTGACCTTGCATAAGTGTGGAAGATGGGAAGCTAGAATGGGCCAATTTTTAGGAAAAAAGTACGTTTATTTGGGTTTGTTTGATACCGAGATTGAAGCTGCAAGGGCTTATGACAAAGCTGCCATTAAATGTAATGCCAGGGAAGCAGTCACCAACTTCGATCCAAGCATCTACGATGCCGAGCTCAATATTAATGCAACTGAATCTTCAAGAAATGAAGGTAATTATGAACACAATCTAGATTTGAGTTTAGGAAATTCAAGCTCAAAACAAGACAAGCAAAGTTCTTCAATAAATGTTCATGAGGGATATTATAATAGGCCTGATCAGGTAAATAATGGAAAAGATAAGCAGCTTGAGACTGATACCATGCAGCTCTTAAGCCAAACCCATCTTCAATATCATGACGGTAATCAAAGATATGAAAACTTCATTAGATGGCCTGGACATTCCCATTTACCTCAATATCCACAAAATAATCAAATTGAGATCTTAAGCAGCAGCAATGGATTAGGAGGAAGATCAGGAGAAGGAAATGATCATGAACTTTCGTTGTCTATGAACATCAGTGATCATCGACATGAACATTGGCAAATATCTGGTTCTTCTCAAATGTTTGCAAATGCTGCAGCATCATCAGGATTCCCACCACCATCAGTACCACATGAGATCAGACGCACCCAAAATTGGCTGCACAAAAATGAGTTTCACTAA | 1512 | 46.03 | MWDLNDSPDWRRDDESEGCSSPKTASIDGDDEKGKRRGSVSNSSSSVVIFEDDQDGSDEDQAAADVRRLVKQRSNNGRLLGFSDTGPPVTRKFFPVGGPEEVGMGPIPMMDVDPSFGGGDDGTEGVTFPRAHWVGVKFSHSEPLGGPKAAVQEISQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGMEADINFSIKDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNAREAVTNFDPSIYDAELNINATESSRNEGNYEHNLDLSLGNSSSKQDKQSSSINVHEGYYNRPDQVNNGKDKQLETDTMQLLSQTHLQYHDGNQRYENFIRWPGHSHLPQYPQNNQIEILSSSNGLGGRSGEGNDHELSLSMNISDHRHEHWQISGSSQMFANAAASSGFPPPSVPHEIRRTQNWLHKNEFH | 503 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 727322 | 730591 | - | Conep08aG0014000.1 | Cone8ag0138 | 442687 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone8ag0138 | 503 | ProSiteProfiles | AP2/ERF domain profile. | 263 | 320 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone8ag0138 | 503 | MobiDBLite | consensus disorder prediction | 336 | 369 | - | - | |
Cone8ag0138 | 503 | MobiDBLite | consensus disorder prediction | 336 | 381 | - | - | |
Cone8ag0138 | 503 | FunFam | AP2-like ethylene-responsive transcription factor | 262 | 322 | - | - | |
Cone8ag0138 | 503 | CDD | AP2 | 262 | 322 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone8ag0138 | 503 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 63 | 386 | - | - | |
Cone8ag0138 | 503 | SMART | rav1_2 | 171 | 233 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone8ag0138 | 503 | SMART | rav1_2 | 263 | 326 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone8ag0138 | 503 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Cone8ag0138 | 503 | FunFam | AP2-like ethylene-responsive transcription factor | 170 | 229 | - | - | |
Cone8ag0138 | 503 | ProSiteProfiles | AP2/ERF domain profile. | 171 | 227 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone8ag0138 | 503 | Pfam | AP2 domain | 262 | 310 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone8ag0138 | 503 | Pfam | AP2 domain | 171 | 220 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone8ag0138 | 503 | Gene3D | AP2/ERF domain | 170 | 229 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone8ag0138 | 503 | Gene3D | AP2/ERF domain | 262 | 321 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone8ag0138 | 503 | MobiDBLite | consensus disorder prediction | 1 | 64 | - | - | |
Cone8ag0138 | 503 | MobiDBLite | consensus disorder prediction | 144 | 171 | - | - | |
Cone8ag0138 | 503 | SUPERFAMILY | DNA-binding domain | 170 | 228 | IPR016177 | GO:0003677(InterPro) | |
Cone8ag0138 | 503 | SUPERFAMILY | DNA-binding domain | 262 | 322 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone10ag0265 | Cone-Chr10:1265019 | Cone8ag0138 | Cone-Chr8:727322 | 5.61E-108 | dispersed | |
Cone1ag0696 | Cone-Chr1:6470469 | Cone8ag0138 | Cone-Chr8:727322 | 2.09E-115 | dispersed | |
Cone1ag1335 | Cone-Chr1:56459580 | Cone8ag0138 | Cone-Chr8:727322 | 3.74E-61 | dispersed | |
Cone3ag0291 | Cone-Chr3:1509147 | Cone8ag0138 | Cone-Chr8:727322 | 2.40E-110 | dispersed | |
Cone5ag0321 | Cone-Chr5:1359024 | Cone8ag0138 | Cone-Chr8:727322 | 1.19E-61 | dispersed | |
Cone5ag1204 | Cone-Chr5:5461638 | Cone8ag0138 | Cone-Chr8:727322 | 2.77E-118 | dispersed | |
Cone8ag0138 | Cone-Chr8:727322 | Cone6ag1392 | Cone-Chr6:11213338 | 2.49E-10 | dispersed | |
Cone12ag0139 | Cone-Chr12:721303 | Cone8ag0138 | Cone-Chr8:727322 | 2.28E-285 | wgd | |
Cone6ag1405 | Cone-Chr6:11297736 | Cone8ag0138 | Cone-Chr8:727322 | 1.64E-139 | wgd | |
Cone8ag0138 | Cone-Chr8:727322 | Cone9ag1333 | Cone-Chr9:10006464 | 4.33E-150 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46622 | PF14009 | DUF4228 | 1.20E-27 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone8ag0138 | K09284 | - | rcu:8260999 | 514.998 |